MirGeneDB 3.0
MirGeneDB ID

Sme-Mir-36-P20b

Family name MIR-36 (all species)
Seed CACCGGG
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-36a
Paralogues Sme-Mir-36-P19  Sme-Mir-36-P20a 
Orthologues Agr-Mir-36  Bge-Mir-36  Cbr-Mir-36-o20  Cte-Mir-36  Dgr-Mir-36  Dlo-Mir-36  Dma-Mir-36  Dpu-Mir-36  Eba-Mir-36  Gsp-Mir-36  Isc-Mir-36  Lhy-Mir-36  Llo-Mir-36  Mgi-Mir-36  Mom-Mir-36  Npo-Mir-36  Ofu-Mir-36  Pau-Mir-36  Pcr-Mir-36  Pdu-Mir-36  Pve-Mir-36  Rph-Mir-36  Snu-Mir-36  Tca-Mir-36  War-Mir-36 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Protostomia
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000019_dd_Smes_g4_19: 7234834-7234895 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-36-P20b)		 Mir-36-P20a NNSW01000019_dd_Smes_g4_19: 7234307-7234370 [+] UCSC Ensembl
Mir-36-P20b NNSW01000019_dd_Smes_g4_19: 7234834-7234895 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUAAAAUACAUAUUUGUAGCCACAGUGUUUUGAUGCAUGCUACUUGGUUUUGUUGUUAUUAUAUUAACAUCACCGGGUAGACAUUCAUUAUACAACUGUUGUUUUAUCCUCAAUUCAUUUGA
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Structure
        10          20        30         40        50          
AUAAAAUACAUAUUUGU--   C     GUUU     C   -|        UU  UUGUUAU 
                   AGC ACAGU    UGAUG AUG CUACUUGGU  UG       \
                   UUG UGUCA    AUUAC UAC GAUGGGCCA  AC       U
AGUUUACUUAACUCCUAUU   U     ACAU     U   A^        CU  AAUUAUA 
120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ag Ag Di Gf Ne Ph Se Se Se Se Se Se Se Se Se Se Se Wh Wh Wh
Star sequence

Sme-Mir-36-P20b_5p*
mirBase accessionMIMAT0003981
Sequence 
0- UGAUGCAUGCUACUUGGUUUUG -22
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Mature sequence

Sme-Mir-36-P20b_3p
mirBase accessionMIMAT0003982
Sequence 
39- UCACCGGGUAGACAUUCAUUAUA -62
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