Mir-36-P20a

MirGeneDB ID

Sme-Mir-36-P20a

Family name

MIR-36 (all species)

Seed

CACCGGG

Species

Freshwater planarian (Schmidtea mediterranea)

MiRBase ID

sme-mir-36c

Paralogues

Sme-Mir-36-P19 Sme-Mir-36-P20b

Orthologues

Agr-Mir-36 Bge-Mir-36 Cbr-Mir-36-o20 Cte-Mir-36 Dgr-Mir-36 Dlo-Mir-36 Dma-Mir-36 Dpu-Mir-36 Eba-Mir-36 Gsp-Mir-36 Isc-Mir-36 Lhy-Mir-36 Llo-Mir-36 Mgi-Mir-36 Mom-Mir-36 Npo-Mir-36 Ofu-Mir-36 Pau-Mir-36 Pcr-Mir-36 Pdu-Mir-36 Pve-Mir-36 Rph-Mir-36 Snu-Mir-36 Tca-Mir-36 War-Mir-36

Node of Origin (locus)

S. mediterranea

Node of Origin (family)

Protostomia

Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)

NNSW01000019_dd_Smes_g4_19: 7234307-7234370 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-36-P20a)

Mir-36-P20a NNSW01000019_dd_Smes_g4_19: 7234307-7234370 [+] UCSC Ensembl
Mir-36-P20b NNSW01000019_dd_Smes_g4_19: 7234834-7234895 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UAAGAAUUUUGAAUUUCAACAUAAAUUAGCGAUGAUUGUCCAACUGGUUUGGUGUCGAGUUGAAAAAUGCAUCACCGGGUAGACAUUCAUUCUCUAAAUUUAUCGUCAAUCUCCUUUUAUAUUG

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Structure

        10        20          30         40         50        60
UAAGAAUUUUGAAUUUCA  -     -    C -    U    CAA     U-| GUGUCGAG 
                  AC AUAAA UUAG G AUGA UGUC   CUGGU  UG        U
                  UG UAUUU AAUC C UACU ACAG   GGCCA  AC        U
GUUAUAUUUUCCUCUAAC  C     A    U U    U    AUG     CU^ GUAAAAAG 
  120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Ag	Ag	Di	Gf	Ne	Ph	Se	Se	Se	Se	Se	Se	Se	Se	Se	Se	Se	Wh	Wh	Wh

Star sequence

Sme-Mir-36-P20a_5p*

mirBase accession

MIMAT0012158

Sequence

0- GAUGAUUGUCCAACUGGUUUG -21

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Mature sequence

Sme-Mir-36-P20a_3p

mirBase accession

MIMAT0011261

Sequence

41- UCACCGGGUAGACAUUCAUUCUC -64

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