Mir-36-P13

MirGeneDB ID

Lpo-Mir-36-P13

Family name

MIR-36 (all species)

Seed

CCCCGGG

Species

Atlantic horseshoe crab (Limulus polyphemus)

MiRBase ID

Paralogues

Lpo-Mir-36-P11 Lpo-Mir-36-P12

Orthologues

Agr-Mir-36 Bge-Mir-36 Cbr-Mir-36-o13 Cte-Mir-36 Dgr-Mir-36 Dlo-Mir-36 Dma-Mir-36 Dpu-Mir-36 Eba-Mir-36 Gsp-Mir-36 Isc-Mir-36 Lhy-Mir-36 Llo-Mir-36 Mgi-Mir-36 Mom-Mir-36 Npo-Mir-36 Ofu-Mir-36 Pau-Mir-36 Pcr-Mir-36 Pdu-Mir-36 Pve-Mir-36 Rph-Mir-36 Snu-Mir-36 Tca-Mir-36 War-Mir-36

Node of Origin (locus)

L. polyphemus

Node of Origin (family)

Protostomia

Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)

NW_013670263.1: 49161-49221 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

UCACAGAAUAUCAUCUCAGGUGUCCAAAAGUGAUGGAUGUCCAUUUGGUAGAUGUUUUUAAUUGUUCAUCCCCGGGUGAACAUUCAUCCGGCCAUGUAUGCGCAACUUUUGCCACCUCGUG

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Structure

        10        20         30          40        50        60
UCACAGAAUAUCAUCUCAG    CCAAAA-  --|        C       UA    UUUUU 
                   GUGU       GU  GAUGGAUGU CAUUUGG  GAUG     A
                   CGCG       CG  CUACUUACA GUGGGCC  CUAC     A
GUGCUCCACCGUUUUCAA-    UAUGUAC  GC^        A       C-    UUGUU 
 .       110        100        90        80         70

Deep sequencing

3' NTU

Unknown

Motifs

Tissue expression

Ge	Ge	So	So	So	To

Star sequence

Lpo-Mir-36-P13_5p* (predicted)

mirBase accession

None

Sequence

0- UGAUGGAUGUCCAUUUGGUAGAUG -24

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Mature sequence

Lpo-Mir-36-P13_3p (predicted)

mirBase accession

None

Sequence

38- UCCCCGGGUGAACAUUCAUCCGG -61

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