MirGeneDB 3.0

MirGeneDB ID

Lpo-Mir-36-P12

Family name MIR-36 (all species)
Seed CACCGGG
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-36-P11  Lpo-Mir-36-P13 
Orthologues Agr-Mir-36  Bge-Mir-36  Cbr-Mir-36-o12  Cte-Mir-36  Dgr-Mir-36  Dlo-Mir-36  Dma-Mir-36  Dpu-Mir-36  Eba-Mir-36  Gsp-Mir-36  Isc-Mir-36  Lhy-Mir-36  Llo-Mir-36  Mgi-Mir-36  Mom-Mir-36  Npo-Mir-36  Ofu-Mir-36  Pau-Mir-36  Pcr-Mir-36  Pdu-Mir-36  Pve-Mir-36  Rph-Mir-36  Snu-Mir-36  Tca-Mir-36  War-Mir-36 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Protostomia
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)
NW_013671891.1: 17371-17431 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UCACUGGAUUACCUAAUUAGUGUACCCACCUGAUGAGCGUAGACCCGGUAAGUGUAGAUUUUCUAUCAUCACCGGGUAAACAUUCAUCCGGGUUUUGCACACAUUUAUCGACGAAAGCUAC
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Structure
        10          20        30         40        50          
UCACUGGAUUACCUAAUUA--|    CCC     -     C  AG       AAGUGUAGAU 
                     GUGUA   ACCUG AUGAG GU  ACCCGGU          \
                     CACGU   UGGGC UACUU CA  UGGGCCA          U
CAUCGAAAGCAGCUAUUUACA^    UU-     C     A  AA       CUACUAUCUU 
 .       110       100         90        80        70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ge Ge So So So To
Star sequence

Lpo-Mir-36-P12_5p* (predicted)

mirBase accessionNone
Sequence
0- UGAUGAGCGUAGACCCGGUAAGU -23
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Mature sequence

Lpo-Mir-36-P12_3p

mirBase accessionNone
Sequence
38- UCACCGGGUAAACAUUCAUCCGG -61
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