MirGeneDB ID | Pca-Mir-36-P24 |
Family name |
MIR-36 (all species) |
Seed |
CACCGGG |
Species |
Penis worm (Priapulus caudatus) |
MiRBase ID |
|
Paralogues |
Pca-Mir-36-P23
Pca-Mir-36-P25
|
Orthologues |
Agr-Mir-36
Bge-Mir-36
Cbr-Mir-36-o24
Cte-Mir-36
Dgr-Mir-36
Dlo-Mir-36
Dma-Mir-36
Dpu-Mir-36
Eba-Mir-36
Gsp-Mir-36
Isc-Mir-36
Lhy-Mir-36
Llo-Mir-36
Mgi-Mir-36
Mom-Mir-36
Npo-Mir-36
Ofu-Mir-36
Pau-Mir-36
Pcr-Mir-36
Pdu-Mir-36
Pve-Mir-36
Rph-Mir-36
Snu-Mir-36
Tca-Mir-36
War-Mir-36
|
Node of Origin (locus) |
P. caudatus
|
Node of Origin (family) |
Protostomia
|
Genome context (Priapulus_caudatus_gca000485595v2) |
KQ715408.1: 303221-303277 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAUGAAGCAGAUUAUAUGGUGAAACUACUGGGUGCGUGUGCGUCCGGUAGGUGUCACUGCGAGCAUCACCGGGUGCACAUUCAUCCCAGCUGGAUCUACCGCUGCAACCGCCCACAU
Get precursor sequence
|
Structure | 10 20 30 40 50
AAUGAAGCAGAUUAUAUGGUGAAA - -| C GU A UCAC
CUA CUGGG UG GUGUGC CCGGU GGUG U
GGU GACCC AC UACACG GGCCA CUAC G
UACACCCGCCAACGUCGCCAUCUA C U^ U UG - GAGC
110 100 90 80 70 60 |
Deep sequencing |
|
3' NTU |
Unknown
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Pca-Mir-36-P24_5p* (predicted) |
mirBase accession | None |
Sequence |
0- GGUGCGUGUGCGUCCGGUAGGUG -23
Get sequence
|
Mature sequence |
Pca-Mir-36-P24_3p (predicted) |
mirBase accession | None |
Sequence |
35- UCACCGGGUGCACAUUCAUCCC -57
Get sequence
|