MirGeneDB 3.0

MirGeneDB ID

Egr-Mir-36-o36

Family name MIR-36 (all species)
Seed CACCGGG
Species Hydatid worm (Echinococcus granulosus)
MiRBase ID egr-mir-36a
Paralogues Egr-Mir-36-o37 
Orthologues Agr-Mir-36  Bge-Mir-36  Cte-Mir-36  Dgr-Mir-36  Dlo-Mir-36  Dma-Mir-36  Dpu-Mir-36  Eba-Mir-36  Gsp-Mir-36  Isc-Mir-36  Lhy-Mir-36  Llo-Mir-36  Mgi-Mir-36  Mom-Mir-36  Npo-Mir-36  Ofu-Mir-36  Pau-Mir-36  Pcr-Mir-36  Pdu-Mir-36  Pve-Mir-36  Rph-Mir-36  Snu-Mir-36  Tca-Mir-36  Tur-Mir-36-P36  War-Mir-36 
Node of Origin (locus) E. granulosus
Node of Origin (family) Protostomia
Genome context
(GCA_000524195.1_ASM52419v1_Egranulosus)
APAU02000028.1: 704590-704664 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUCCUUCAAAUCCAGUCCAGCUCAGUCUGUACGGAUUGUCCGUCCGGUAACCGCGAUAAGGUGAAGGCCUUUUUAACUGCUGGUCACCGGGUAGACAUUCCUUGCUGACUGGCUCUGAUCAGCACUUUCCAUUUA
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Structure
        10           20        30        40        50        60       
UUCCUUCAAAUCCAGUCC---|  U     U   C   U    CG      A   GCGAUAAGGUGAAG 
                     AGC CAGUC GUA GGA UGUC  UCCGGU ACC              \
                     UCG GUCAG CGU CCU ACAG  GGGCCA UGG              G
AUUUACCUUUCACGACUAGUC^  -     U   U   U    AU      C   UCGUCAAUUUUUCC 
   130       120        110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Eg Eg Ev Ev Ad Fe Fe Hy Hy Hy Li Li Li Mi Mi Mi Po Po Po Po Po Po Po Pr Pr Pr Sm
Star sequence

Egr-Mir-36-o36_5p* (predicted)

mirBase accessionMIMAT0041191
Sequence
0- ACGGAUUGUCCGUCCGGUAACC -22
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Mature sequence

Egr-Mir-36-o36_3p

mirBase accessionMIMAT0041192
Sequence
53- UCACCGGGUAGACAUUCCUUGC -75
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