Mir-36-o29-v1

MirGeneDB ID

Asu-Mir-36-o29-v1

Family name

MIR-36 (all species)

Seed

CACCGGG

Species

Large roundworm (Ascaris suum)

MiRBase ID

asu-mir-36c

Paralogues

Asu-Mir-36-o27 Asu-Mir-36-o28 Asu-Mir-36-o29-v2 Asu-Mir-36-o30 Asu-Mir-36-o31 Asu-Mir-36-o32

Orthologues

Agr-Mir-36 Ava-Mir-36-P29a Ava-Mir-36-P29b Bge-Mir-36 Cte-Mir-36 Dgr-Mir-36 Dlo-Mir-36 Dma-Mir-36 Dpu-Mir-36 Eba-Mir-36 Gsp-Mir-36 Isc-Mir-36 Lhy-Mir-36 Llo-Mir-36 Mgi-Mir-36 Mom-Mir-36 Npo-Mir-36 Ofu-Mir-36 Pau-Mir-36 Pcr-Mir-36 Pdu-Mir-36 Pve-Mir-36 Rph-Mir-36 Snu-Mir-36 Tca-Mir-36 War-Mir-36

Node of Origin (locus)

A.suum

Node of Origin (family)

Protostomia

Genome context
(ASU_PRJNA80881_plustraces)

trace_ANBK02000028: 101-160 [+]

Clustered miRNAs
(< 50kb from Mir-36-o29-v1)

Mir-36-o29-v1 trace_ANBK02000028: 101-160 [+]
Mir-36-o29-v2 trace_ANBK02000028: 101-160 [+]

Precursor
(pre-Mir +30nt flank)

GUUACCUGAAAUGGCAGCGAUGUGACGUGACGGGGAUUCUACUUUUGGUGAAGCGAGCUCAGAUGACUUCACCGGGCUCGAAUCCCUGUCCUGUCAUGAUUCAUGUGCUCAGUUCCACCU

Get precursor sequence

Structure

        10        20          30        40        50          
GUUACCUGAAAUGGCAGCGAU--|     U           UACU          CGAGCU 
                       GUGACG GACGGGGAUUC    UUUGGUGAAG      \
                       UACUGU CUGUCCCUAAG    GGGCCACUUC      C
UCCACCUUGACUCGUGUACUUAG^     C           CUC-          AGUAGA 
.       110       100        90        80         70