Mir-36-o31

MirGeneDB ID

Asu-Mir-36-o31

Family name

MIR-36 (all species)

Seed

CACCGGG

Species

Large roundworm (Ascaris suum)

MiRBase ID

asu-mir-36f

Paralogues

Asu-Mir-36-o27 Asu-Mir-36-o28 Asu-Mir-36-o29-v1 Asu-Mir-36-o29-v2 Asu-Mir-36-o30 Asu-Mir-36-o32

Orthologues

Agr-Mir-36 Bge-Mir-36 Cte-Mir-36 Dgr-Mir-36 Dlo-Mir-36 Dma-Mir-36 Dpu-Mir-36 Eba-Mir-36 Gsp-Mir-36 Isc-Mir-36 Lhy-Mir-36 Llo-Mir-36 Mgi-Mir-36 Mom-Mir-36 Npo-Mir-36 Ofu-Mir-36 Pau-Mir-36 Pcr-Mir-36 Pdu-Mir-36 Pve-Mir-36 Rph-Mir-36 Snu-Mir-36 Tca-Mir-36 Tur-Mir-36-P31 War-Mir-36

Node of Origin (locus)

A.suum

Node of Origin (family)

Protostomia

Genome context
(ASU_PRJNA80881_plustraces)

trace_ANBK02000051: 101-169 [+]

Precursor
(pre-Mir +30nt flank)

AACGGCGUCCUGGAAGCCGGCUGGAGCGUGACAUGGAUUCAGCUAUCUGUGGAGUAGUGCCUUCAAAACAAAUUCUUCACCGGGCUGCAAUCCUUGUCACGCCGGUCUUCUUAUCUCGCGUACUAUCCC

Get precursor sequence

Structure

        10            20        30         40        50        60    
AACGGCGUCCUGGAAGCC----|    GA        U     -     AUCU      UAGUGCCUU 
                      GGCUG  GCGUGACA GGAUU CAGCU    GUGGAG         C
                      CUGGC  CGCACUGU CCUAA GUCGG    CACUUC         A
CCCUAUCAUGCGCUCUAUUCUU^    --        U     C     GC--      UUAAACAAA 
       120       110         100        90          80        70