MirGeneDB 3.0
MirGeneDB ID

Dpu-Mir-965

Family name MIR-965 (all species)
Seed AAGCGUA
Species Common water flea (Daphnia pulex)
MiRBase ID dpu-mir-965
Paralogues
Orthologues Aae-Mir-965  Aga-Mir-965  Bge-Mir-965  Dan-Mir-965  Dlo-Mir-965  Dma-Mir-965  Dme-Mir-965  Dmo-Mir-965  Dsi-Mir-965  Dya-Mir-965  Gpa-Mir-965  Hme-Mir-965  Tca-Mir-965 
Node of Origin (locus) Pancrustacea
Node of Origin (family) Pancrustacea
Genome context
(Daphnia_pulex.V1.0)		 DAPPUscaffold_32: 27782-27843 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-965)		 Mir-965 DAPPUscaffold_32: 27782-27843 [-] Ensembl
Mir-279-P1d DAPPUscaffold_32: 68663-68726 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AACAAUUAAUGUGAAGAAGUGUGCAAAGCAAGGGAAAGGUUGUAGCUCUUAUGUCUCAUUUUGAUUAGCAUAAGCGUAUGGCUUUUCCCCUGCAGUGUCACUUGAUGAACUGCUGUGGCAUC
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Structure
        10           20        30        40        50        60 
AACAAUUAAUGUGAAGA---|   U   AA   A         UG  G U      UCUCAUU 
                    AGUG GCA  GCA GGGAAAGGU  UA C CUUAUG       \
                    UCAC UGU  CGU CCCUUUUCG  AU G GAAUAC       U
CUACGGUGUCGUCAAGUAGU^   -   GA   C         GU  - C      GAUUAGU 
120       110       100         90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Dpu-Mir-965_5p*
mirBase accessionNone
Sequence 
0- AGGGAAAGGUUGUAGCUCUUAUG -23
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Mature sequence

Dpu-Mir-965_3p
mirBase accessionMIMAT0012674
Sequence 
40- UAAGCGUAUGGCUUUUCCCCUG -62
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