MirGeneDB 3.0
84 Daphnia pulex microRNA genes
Sort by genome coordinates Motifs Tissue expression
-   +
MirGeneDB ID ▲ MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) 3' NTU  UG  UGUG CNNC To
Dpu-Bantam dpu-bantam BANTAM GAGAUCA None MIMAT0012634 DAPPUscaffold_115 370169 370231 + Protostomia Protostomia No
Dpu-Iab-4 dpu-mir-iab-4 IAB-4 CGUAUAC MIMAT0012677 MIMAT0012678 DAPPUscaffold_7 515547 515604 + Arthropoda Arthropoda Unknown 1
Dpu-Iab-4-as None IAB-4 GGAUACA None None DAPPUscaffold_7 515544 515604 - Pancrustacea Arthropoda No
Dpu-Let-7 None LET-7 GAGGUAG None None DAPPUscaffold_71 446343 446521 - Bilateria Bilateria No 1 1
Dpu-Mir-1 dpu-mir-1 MIR-1 GGAAUGU None MIMAT0012635 DAPPUscaffold_1 1720883 1720944 - Bilateria Bilateria No 1
Dpu-Mir-2-o2 None MIR-2 AUCACAG None None DAPPUscaffold_77 78818 78876 - Daphnia Protostomia No 1
Dpu-Mir-2-P1 None MIR-2 AUCACAG None None DAPPUscaffold_80 240557 240644 + Arthropoda Protostomia No
Dpu-Mir-2-P2 None MIR-2 AUCACAG None None DAPPUscaffold_80 240731 240792 + Pancrustacea Protostomia No
Dpu-Mir-2-P3 dpu-mir-2-1 MIR-2 AUCACAG None MIMAT0012657 DAPPUscaffold_80 240864 240934 + Arthropoda Protostomia No
Dpu-Mir-2-P4 dpu-mir-2-2 MIR-2 AUCACAG None MIMAT0012657 DAPPUscaffold_80 241044 241106 + Arthropoda Protostomia No 1
Dpu-Mir-2-P5 None MIR-2 AUCACAG None None DAPPUscaffold_32 69416 69503 - Pancrustacea Protostomia No
Dpu-Mir-3 None MIR-3 CACUGGG None None DAPPUscaffold_24 361462 361522 - Pancrustacea Pancrustacea No 1 1
Dpu-Mir-7-P9 dpu-mir-7 MIR-7 GGAAGAC MIMAT0012666 None DAPPUscaffold_191 112550 112613 - D. pulex Bilateria No 1
Dpu-Mir-7-P10 None MIR-7 GGAAGAC None None DAPPUscaffold_11571 1032 1094 - D. pulex Bilateria Unknown 1 1
Dpu-Mir-8 dpu-mir-8 MIR-8 AAUACUG None MIMAT0012669 DAPPUscaffold_131 139395 139468 + Nephrozoa Nephrozoa No 1
Dpu-Mir-9-P9 None MIR-9 CUUUGGU None None DAPPUscaffold_32 69575 69633 - Pancrustacea Bilateria No 1
Dpu-Mir-9-P10 dpu-mir-9 MIR-9 CUUUGGU MIMAT0012671 None DAPPUscaffold_2 1526213 1526273 + Pancrustacea Bilateria No 1 1 1
Dpu-Mir-10-P1-v1 dpu-mir-10 MIR-10 CCCUGUA MIMAT0012636 None DAPPUscaffold_7 304826 304884 - Bilateria Eumetazoa No 1
Dpu-Mir-10-P1-v2 dpu-mir-10 MIR-10 ACCCUGU MIMAT0012636 None DAPPUscaffold_7 304825 304885 - Bilateria Eumetazoa No 1
Dpu-Mir-10-P2 dpu-mir-100 MIR-10 ACCCGUA MIMAT0012637 None DAPPUscaffold_71 446641 446720 - Bilateria Eumetazoa No 1
Dpu-Mir-10-P3 None MIR-10 CCCUGAG None None DAPPUscaffold_71 445364 445427 - Bilateria Eumetazoa No 1 1
Dpu-Mir-10-P4 dpu-mir-993 MIR-10 AAGCUCG None MIMAT0012676 DAPPUscaffold_7 282318 282382 + Protostomia Eumetazoa No
Dpu-Mir-12 dpu-mir-12 MIR-12 GAGUAUU MIMAT0012638 None DAPPUscaffold_1 1847845 1847905 - Protostomia Protostomia No 1 1
Dpu-Mir-22-P2 dpu-mir-745 MIR-22 GGUCCUU None MIMAT0012646 DAPPUscaffold_63 361996 362061 - Bilateria Bilateria No 1
Dpu-Mir-29-P1 dpu-mir-285 MIR-29 AGCACCA None MIMAT0012656 DAPPUscaffold_1 332511 332576 + Bilateria Bilateria No 1
Dpu-Mir-29-P2 None MIR-29 UAGCACC None None DAPPUscaffold_32 69280 69354 - Bilateria Bilateria No
Dpu-Mir-31 dpu-mir-31 MIR-31 GGCAAGA MIMAT0012659 None gnl_ti_814293389_AZSH327271 39 100 - Bilateria Bilateria No
Dpu-Mir-33 dpu-mir-33 MIR-33 AAUGCUU MIMAT0012662 None DAPPUscaffold_90 265100 265165 - Bilateria Bilateria No 1
Dpu-Mir-34 dpu-mir-34 MIR-34 GGCAGUG MIMAT0012663 None DAPPUscaffold_4 1242049 1242114 - Bilateria Bilateria No
Dpu-Mir-36 None MIR-36 CACCGGG None None DAPPUscaffold_32 68520 68579 - Protostomia Protostomia No 1
Dpu-Mir-67 dpu-mir-307 MIR-67 CACAACC None MIMAT0012665 DAPPUscaffold_47 641100 641192 - Protostomia Protostomia No 1
Dpu-Mir-71 dpu-mir-71 MIR-71 GAAAGAC MIMAT0012667 None DAPPUscaffold_80 240430 240495 + Nephrozoa Nephrozoa No
Dpu-Mir-76 dpu-mir-981 MIR-76 UCGUUGU None MIMAT0012675 DAPPUscaffold_2 1450991 1451054 - Nephrozoa Nephrozoa No 1
Dpu-Mir-87-o5a None MIR-87 UGAGCAA None None DAPPUscaffold_1 2190896 2190980 + Daphnia Protostomia No 1
Dpu-Mir-87-o5b None MIR-87 UGAGCAA None None DAPPUscaffold_1 2191079 2191142 + Daphnia Protostomia No 1
Dpu-Mir-92-P3 None MIR-92 AUUGCAC None None DAPPUscaffold_38 876143 876215 + Pancrustacea Bilateria No 1
Dpu-Mir-92-P4 dpu-mir-92 MIR-92 AUUGCAC None MIMAT0012672 DAPPUscaffold_38 876332 876391 + Pancrustacea Bilateria No
Dpu-Mir-96-P2-v1 dpu-mir-263b MIR-96 UUGGCAC MIMAT0012650 None DAPPUscaffold_87 475817 475879 + Bilateria Bilateria No 1
Dpu-Mir-96-P2-v2 dpu-mir-263b MIR-96 UGGCACU MIMAT0012650 None DAPPUscaffold_87 475818 475878 + Bilateria Bilateria No 1
Dpu-Mir-96-P3 dpu-mir-263a MIR-96 AUGGCAC MIMAT0012649 None DAPPUscaffold_87 475620 475711 + Bilateria Bilateria No 1 1
Dpu-Mir-124 dpu-mir-124 MIR-124 AAGGCAC None MIMAT0012639 DAPPUscaffold_120 76898 76961 + Bilateria Bilateria No 1
Dpu-Mir-133 dpu-mir-133 MIR-133 UGGUCCC None MIMAT0012640 DAPPUscaffold_1 1708497 1708561 - Bilateria Bilateria No 1 1
Dpu-Mir-137 dpu-mir-137 MIR-137 UAUUGCU None MIMAT0012641 DAPPUscaffold_92 410937 410994 + Bilateria Bilateria No 1
Dpu-Mir-153 dpu-mir-153 MIR-153 UGCAUAG None MIMAT0012642 DAPPUscaffold_3 3560645 3560707 - Bilateria Bilateria Unknown
Dpu-Mir-184 None MIR-184 GGACGGA None None DAPPUscaffold_24 317035 317138 + Nephrozoa Nephrozoa No 1
Dpu-Mir-190 None MIR-190 GAUAUGU None None DAPPUscaffold_3 1681569 1681633 + Bilateria Bilateria No 1
Dpu-Mir-193-P1 dpu-mir-193 MIR-193 ACUGGCC None MIMAT0012643 DAPPUscaffold_167 85457 85514 - Bilateria Bilateria No
Dpu-Mir-210 None MIR-210 UUGUGCG None None DAPPUscaffold_51 480342 480417 - Bilateria Bilateria No 1
Dpu-Mir-216-P1 dpu-mir-283 MIR-216 AAUAUCA MIMAT0012644 None DAPPUscaffold_1 1848726 1848812 - Nephrozoa Nephrozoa No 1
Dpu-Mir-216-P2 None MIR-216 AAUCUCA None None DAPPUscaffold_1 1848248 1848369 - Nephrozoa Nephrozoa No 1
Dpu-Mir-219 dpu-mir-219 MIR-219 GAUUGUC MIMAT0012645 None DAPPUscaffold_253 93596 93656 - Bilateria Bilateria No 1
Dpu-Mir-252-P1 dpu-mir-252b MIR-252 UAAGUAG MIMAT0012648 None DAPPUscaffold_8 127380 127444 + Bilateria Bilateria No 1 1
Dpu-Mir-252-P2-v1 dpu-mir-252a MIR-252 UAAGUAC MIMAT0012647 None DAPPUscaffold_285 66066 66134 + Bilateria Bilateria Unknown 1
Dpu-Mir-252-P2-v2 dpu-mir-252a MIR-252 AAGUACU MIMAT0012647 None DAPPUscaffold_285 66067 66133 + Bilateria Bilateria No 1
Dpu-Mir-275 dpu-mir-275 MIR-275 CAGGUAC None MIMAT0012651 DAPPUscaffold_4 1790740 1790804 + Arthropoda Arthropoda No 1 1
Dpu-Mir-276 dpu-mir-276 MIR-276 AGGAACU None MIMAT0012652 DAPPUscaffold_15 755618 755688 + Arthropoda Arthropoda No 1
Dpu-Mir-277 None MIR-277 AAAUGCA None None DAPPUscaffold_4 1242975 1243041 - Protostomia Protostomia No 1
Dpu-Mir-278 dpu-mir-278 MIR-278 CGGUGGG None MIMAT0012653 DAPPUscaffold_60 694705 694885 - Bilateria Bilateria No 1 1 1
Dpu-Mir-279-o8 None MIR-279 GACUAGA None None DAPPUscaffold_62 283702 283760 - Daphnia Protostomia No 1 1 1
Dpu-Mir-279-o9 None MIR-279 GACUAGA None None DAPPUscaffold_63 523653 523745 - Daphnia Protostomia No
Dpu-Mir-279-P1c None MIR-279 GACUAGA None None DAPPUscaffold_32 69703 69769 - Daphnia Protostomia No 1
Dpu-Mir-279-P1d dpu-mir-279b MIR-279 GACUAGA None MIMAT0018923 DAPPUscaffold_32 68663 68726 - Daphnia Protostomia No 1
Dpu-Mir-279-P2 None MIR-279 GACUAGA None None DAPPUscaffold_43 177095 177172 + Pancrustacea Protostomia No 1
Dpu-Mir-279-P3 dpu-mir-279a MIR-279 GACUAGA None MIMAT0012654 DAPPUscaffold_43 177501 177567 + Pancrustacea Protostomia No 1 1
Dpu-Mir-281 dpu-mir-281 MIR-281 AGAGAGC None MIMAT0012655 DAPPUscaffold_11 1065350 1065416 - Nephrozoa Nephrozoa No 1
Dpu-Mir-282 None MIR-282 AGCCUCU None None DAPPUscaffold_57 216593 216687 - Pancrustacea Pancrustacea No 1 1
Dpu-Mir-305 dpu-mir-305 MIR-305 UUGUACU MIMAT0018924 None DAPPUscaffold_4 1791164 1791251 + Cryptovermes Cryptovermes No 1
Dpu-Mir-315 dpu-mir-315 MIR-315 UUUGAUU MIMAT0012660 None DAPPUscaffold_58 431908 431996 + Nephrozoa Nephrozoa No 1 1
Dpu-Mir-317 dpu-mir-317 MIR-317 GAACACA None MIMAT0012661 DAPPUscaffold_4 1243961 1244027 - Protostomia Protostomia No 1
Dpu-Mir-375 dpu-mir-375 MIR-375 UUGUUCG None MIMAT0012664 DAPPUscaffold_28 221232 221513 + Nephrozoa Nephrozoa No 1
Dpu-Mir-750 None MIR-750 CAGAUCU None None DAPPUscaffold_113 97296 97448 + Protostomia Protostomia No 1
Dpu-Mir-965 dpu-mir-965 MIR-965 AAGCGUA None MIMAT0012674 DAPPUscaffold_32 27782 27843 - Pancrustacea Pancrustacea No 1
Dpu-Mir-1175 None MIR-1175 GAGAUUC None None DAPPUscaffold_113 97594 97659 + Protostomia Protostomia No 1
Dpu-Mir-1993 None MIR-1993 AUUAUGC None None DAPPUscaffold_21 1050964 1051024 + Protostomia Protostomia No 1
Dpu-Mir-12603 None MIR-12603 GUGAUGU None None DAPPUscaffold_58 365534 365601 - Daphnia Daphnia No 1 1
Dpu-Mir-12604 None MIR-12604 CUGGGUU None None DAPPUscaffold_24 361300 361359 - Daphnia Daphnia No 1
Dpu-Mir-12605 None MIR-12605 UGCACUG None None DAPPUscaffold_13 1740035 1740097 + Branchiopoda Branchiopoda No 1
Dpu-Mir-12606 None MIR-12606 CUUGGUU None None DAPPUscaffold_24 361694 361754 - Daphnia Daphnia No 1 1
Dpu-Mir-12607 None MIR-12607 ACUGGGU None None DAPPUscaffold_24 361858 361920 - Daphnia Daphnia Unknown 1
Dpu-Mir-12608 None MIR-12608 CACUGGG None None CAJVNM010000013.1:1301350-1301500 54 115 + Daphnia Daphnia No 1
Dpu-Novel-1 None DPU-NOVEL-1 UACAUAU None None DAPPUscaffold_6 2376913 2376973 + D. pulex D. pulex No 1
Dpu-Novel-2 None DPU-NOVEL-2 CGUGGAG None None DAPPUscaffold_4 2548779 2548846 - D. pulex D. pulex No
Dpu-Novel-3 None DPU-NOVEL-3 ACAUAAU None None DAPPUscaffold_87 490784 490839 + D. pulex D. pulex No
Dpu-Novel-4 None DPU-NOVEL-4 AAAAUUU None None DAPPUscaffold_6 2376718 2376781 + D. pulex D. pulex No 1 1

Download sequences for: precursor | 5p | 3p | mature | star | mature/star | loop | extend_pre | all

Download genome coordinates (GFF format)

Download count matrix