Mir-216-P2

MirGeneDB ID

Dpu-Mir-216-P2

Family name

MIR-216 (all species)

Seed

AAUCUCA

Species

Common water flea (Daphnia pulex)

MiRBase ID

Paralogues

Dpu-Mir-216-P1

Orthologues

Aae-Mir-216-P2 Aca-Mir-216-P2a Aca-Mir-216-P2b Aga-Mir-216-P2 Agr-Mir-216-P2c Agr-Mir-216-P2d Ami-Mir-216-P2a Ami-Mir-216-P2b Asu-Mir-216-P2 Ava-Mir-216-P2 Bfl-Mir-216-P2 Bge-Mir-216-P2 Bko-Mir-216-P2 Bla-Mir-216-P2 Bpl-Mir-216-P2 Bta-Mir-216-P2a Bta-Mir-216-P2b Cbr-Mir-216-P2 Cel-Mir-216-P2 Cfa-Mir-216-P2a Cfa-Mir-216-P2b Cja-Mir-216-P2a Cja-Mir-216-P2b Cli-Mir-216-P2a Cli-Mir-216-P2b Cmi-Mir-216-P2a Cmi-Mir-216-P2b Cpi-Mir-216-P2a Cpi-Mir-216-P2b Cpo-Mir-216-P2a Cpo-Mir-216-P2b Csc-Mir-216-P2 Cte-Mir-216-P2c Cte-Mir-216-P2d Dan-Mir-216-P2 Dgr-Mir-216-P2c Dlo-Mir-216-P2 Dma-Mir-216-P2 Dme-Mir-216-P2 Dmo-Mir-216-P2 Dno-Mir-216-P2a Dno-Mir-216-P2b Dre-Mir-216-P2a Dre-Mir-216-P2b Dsi-Mir-216-P2 Dya-Mir-216-P2 Eba-Mir-216-P2c Ebu-Mir-216-P2a2 Ebu-Mir-216-P2b1 Eca-Mir-216-P2a Eca-Mir-216-P2b Efe-Mir-216-P2c Esc-Mir-216-P2d Ete-Mir-216-P2a Ete-Mir-216-P2b Gga-Mir-216-P2a Gga-Mir-216-P2b Gja-Mir-216-P2a Gja-Mir-216-P2b Gmo-Mir-216-P2a Gmo-Mir-216-P2b Hme-Mir-216-P2 Hru-Mir-216-P2d Hsa-Mir-216-P2a Hsa-Mir-216-P2b Isc-Mir-216-P2 Laf-Mir-216-P2a Laf-Mir-216-P2b Lan-Mir-216-P2d1 Lan-Mir-216-P2d2 Lch-Mir-216-P2a Lch-Mir-216-P2b Lgi-Mir-216-P2d Lhy-Mir-216-P2c Lhy-Mir-216-P2d Llo-Mir-216-P2c Llo-Mir-216-P2d Loc-Mir-216-P2a Loc-Mir-216-P2b Lpo-Mir-216-P2g Lpo-Mir-216-P2h Lpo-Mir-216-P2i Mal-Mir-216-P2a Mal-Mir-216-P2b Mdo-Mir-216-P2a Mdo-Mir-216-P2b Mgi-Mir-216-P2d Mml-Mir-216-P2a Mml-Mir-216-P2b Mmr-Mir-216-P2a Mmr-Mir-216-P2b Mmu-Mir-216-P2a Mmu-Mir-216-P2b Mom-Mir-216-P2c Mom-Mir-216-P2d Mun-Mir-216-P2b Neu-Mir-216-P2a Neu-Mir-216-P2b Npo-Mir-216-P2c Npo-Mir-216-P2d Oan-Mir-216-P2a Oan-Mir-216-P2b Obi-Mir-216-P2c Obi-Mir-216-P2d Ocu-Mir-216-P2a Ocu-Mir-216-P2b Ofu-Mir-216-P2c Ofu-Mir-216-P2d Ovu-Mir-216-P2c Ovu-Mir-216-P2d Pab-Mir-216-P2a Pab-Mir-216-P2b Pau-Mir-216-P2c Pau-Mir-216-P2d Pbv-Mir-216-P2a Pbv-Mir-216-P2b Pca-Mir-216-P2 Pcr-Mir-216-P2o1-v1 Pcr-Mir-216-P2o1-v2 Pcr-Mir-216-P2o2 Pdu-Mir-216-P2d Pma-Mir-216-P2a1 Pma-Mir-216-P2a2 Pma-Mir-216-P2b1 Pve-Mir-216-P2d Rno-Mir-216-P2a Rno-Mir-216-P2b Rph-Mir-216-P2d Sha-Mir-216-P2a Sha-Mir-216-P2b Sme-Mir-216-P2e Sme-Mir-216-P2f Snu-Mir-216-P2c Snu-Mir-216-P2d Spt-Mir-216-P2a Spt-Mir-216-P2b Sto-Mir-216-P2a Sto-Mir-216-P2b Tca-Mir-216-P2 Tgu-Mir-216-P2a Tgu-Mir-216-P2b Tni-Mir-216-P2a Tni-Mir-216-P2b Tur-Mir-216-P2 War-Mir-216-P2c Xla-Mir-216-P2b3 Xla-Mir-216-P2b4 Xtr-Mir-216-P2b

Node of Origin (locus)

Bilateria

Node of Origin (family)

Nephrozoa

Genome context
(Daphnia_pulex.V1.0)

DAPPUscaffold_1: 1848248-1848369 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-216-P2)

Mir-12 DAPPUscaffold_1: 1847845-1847905 [-] Ensembl
Mir-216-P1 DAPPUscaffold_1: 1848726-1848812 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

CCGUUUAUUUGAUUCAUGGCUUUCGCCUGGAAAUCUCAUACGGUAAUUUGGAGAAAAUUGGGAAAAUUCCUUGUAGGAGUUUUGGUUAUUCGUGCGUUUGCUCGAGUCUCUCCAUCCAUGGCCCAGUAUCCAAAUUGCUGUUUGGGGUGGCCAGGCGAUCACCCCAGUAGCUACUAACCCCU

Get precursor sequence

Structure

        10          20        30        40        50        60        70        80        90
CCGUUUAUUUGAUUCAU--| CUU        AA      U             GAAAAUUGGGAAAAUUCCUUGUAGGAGUUUUGGUUAU 
                   GG   UCGCCUGG  AUCUCA ACGGUAAUUUGGA                                     U
                   CC   AGCGGACC  UGGGGU UGUCGUUAAACCU                                     C
UCCCCAAUCAUCGAUGACC^ ACU        GG      U             AUGACCCGGUACCUACCUCUCUGAGCUCGUUUGCGUG 
180       170       160       150       140       130       120       110       100

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14)

Tissue expression

To

Mature sequence

Dpu-Mir-216-P2_5p

mirBase accession

None

Sequence

0- AAAUCUCAUACGGUAAUUUGGA -22

Get sequence

Star sequence

Dpu-Mir-216-P2_3p*

mirBase accession

None

Sequence

100- CAAAUUGCUGUUUGGGGUGGCC -122

Get sequence