Mir-216-P2a

MirGeneDB ID

Mdo-Mir-216-P2a

Family name

MIR-216 (all species)

Seed

AAUCUCU

Species

Gray short-tailed opossum (Monodelphis domestica)

MiRBase ID

Paralogues

Mdo-Mir-216-P2b

Orthologues

Aae-Mir-216-P2 Aca-Mir-216-P2a Aga-Mir-216-P2 Ami-Mir-216-P2a Asu-Mir-216-P2 Ava-Mir-216-P2 Bfl-Mir-216-P2 Bge-Mir-216-P2 Bko-Mir-216-P2 Bla-Mir-216-P2 Bpl-Mir-216-P2 Bta-Mir-216-P2a Cbr-Mir-216-P2 Cel-Mir-216-P2 Cfa-Mir-216-P2a Cja-Mir-216-P2a Cli-Mir-216-P2a Cmi-Mir-216-P2a Cpi-Mir-216-P2a Cpo-Mir-216-P2a Csc-Mir-216-P2 Dan-Mir-216-P2 Dlo-Mir-216-P2 Dma-Mir-216-P2 Dme-Mir-216-P2 Dmo-Mir-216-P2 Dno-Mir-216-P2a Dpu-Mir-216-P2 Dre-Mir-216-P2a Dsi-Mir-216-P2 Dya-Mir-216-P2 Ebu-Mir-216-P2a2 Eca-Mir-216-P2a Ete-Mir-216-P2a Gga-Mir-216-P2a Gja-Mir-216-P2a Gmo-Mir-216-P2a Hme-Mir-216-P2 Hsa-Mir-216-P2a Isc-Mir-216-P2 Laf-Mir-216-P2a Lch-Mir-216-P2a Loc-Mir-216-P2a Mal-Mir-216-P2a Mml-Mir-216-P2a Mmr-Mir-216-P2a Mmu-Mir-216-P2a Neu-Mir-216-P2a Oan-Mir-216-P2a Ocu-Mir-216-P2a Pab-Mir-216-P2a Pbv-Mir-216-P2a Pca-Mir-216-P2 Pma-Mir-216-P2a1 Pma-Mir-216-P2a2 Rno-Mir-216-P2a Sha-Mir-216-P2a Spt-Mir-216-P2a Sto-Mir-216-P2a Tca-Mir-216-P2 Tgu-Mir-216-P2a Tni-Mir-216-P2a Tur-Mir-216-P2

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Nephrozoa

Genome context
(monDom5_add)

1: 638478427-638478488 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-216-P2a)

Mir-216-P2b 1: 638493866-638493927 [+] UCSC Ensembl
Mir-217 1: 638507653-638507711 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCCCAAGCUGAAUGUGAGUUGCAGACUGGGAAAUCUCUGCAGGCAAAUGUGGUGUCGCUAUAGUUAUCACACAAUUACCCGUAGAGAUUCUGCAAUCUGACAUCAUGCAUCAGAUUUGUGCU

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Structure

        10                 20        30        40        50        60
UCCCAAGCUGAAUGUGA---------|       CUGGGAA        A  C  A    GUGUCGCU 
                          GUUGCAGA       AUCUCUGC GG AA UGUG        A
                          UAACGUCU       UAGAGAUG CC UU ACAC        U
UCGUGUUUAGACUACGUACUACAGUC^       -------        C  A  A    ACUAUUGA 
120       110       100        90               80        70

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Br	Ce	He	Ki	Te

Mature sequence

Mdo-Mir-216-P2a_5p

mirBase accession

None

Sequence

0- AAAUCUCUGCAGGCAAAUGUGG -22

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Star sequence

Mdo-Mir-216-P2a_3p* (predicted)

mirBase accession

None

Sequence

41- CAAUUACCCGUAGAGAUUCUG -62

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