MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-216-P2a1

Family name MIR-216 (all species)
Seed AAUCUCU
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-216b
Paralogues Pma-Mir-216-P2a2  Pma-Mir-216-P2b1 
Orthologues Aae-Mir-216-P2  Aca-Mir-216-P2a  Aga-Mir-216-P2  Ami-Mir-216-P2a  Asu-Mir-216-P2  Ava-Mir-216-P2  Bfl-Mir-216-P2  Bge-Mir-216-P2  Bko-Mir-216-P2  Bla-Mir-216-P2  Bpl-Mir-216-P2  Bta-Mir-216-P2a  Cbr-Mir-216-P2  Cel-Mir-216-P2  Cfa-Mir-216-P2a  Cja-Mir-216-P2a  Cli-Mir-216-P2a  Cmi-Mir-216-P2a  Cpi-Mir-216-P2a  Cpo-Mir-216-P2a  Csc-Mir-216-P2  Dan-Mir-216-P2  Dlo-Mir-216-P2  Dma-Mir-216-P2  Dme-Mir-216-P2  Dmo-Mir-216-P2  Dno-Mir-216-P2a  Dpu-Mir-216-P2  Dre-Mir-216-P2a  Dsi-Mir-216-P2  Dya-Mir-216-P2  Eca-Mir-216-P2a  Ete-Mir-216-P2a  Gga-Mir-216-P2a  Gja-Mir-216-P2a  Gmo-Mir-216-P2a  Hme-Mir-216-P2  Hsa-Mir-216-P2a  Isc-Mir-216-P2  Laf-Mir-216-P2a  Lch-Mir-216-P2a  Loc-Mir-216-P2a  Mal-Mir-216-P2a  Mdo-Mir-216-P2a  Mml-Mir-216-P2a  Mmr-Mir-216-P2a  Mmu-Mir-216-P2a  Neu-Mir-216-P2a  Oan-Mir-216-P2a  Ocu-Mir-216-P2a  Pab-Mir-216-P2a  Pbv-Mir-216-P2a  Pca-Mir-216-P2  Rno-Mir-216-P2a  Sha-Mir-216-P2a  Spt-Mir-216-P2a  Sto-Mir-216-P2a  Tca-Mir-216-P2  Tgu-Mir-216-P2a  Tni-Mir-216-P2a  Tur-Mir-216-P2 
Node of Origin (locus) Cyclostomata
Node of Origin (family) Nephrozoa
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046074.1: 1955059-1955119 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-216-P2a1)		 Mir-217-P1 NC_046074.1: 1950981-1951039 [-] UCSC Ensembl
Mir-216-P2b1 NC_046074.1: 1952348-1952411 [-] UCSC Ensembl
Mir-216-P2a1 NC_046074.1: 1955059-1955119 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCAAAUAGGUGAUAAAUACUGCGGGUUGUAAAAUCUCUGCAGGCAACUGUGGAAAGGUGACCUUGUCACACAUUGGCCUGAAGGGAUUAUACAAACUGUAGCAGACGCAUCACUAUCACAU
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Structure
        10          20        30        40        50          
GCAAAUAGGUGAUAAAUA--|     G     A       G     AAC    GAAAGGUG 
                    CUGCGG UUGUA AAUCUCU CAGGC   UGUG        \
                    GAUGUC AACAU UUAGGGA GUCCG   ACAC        A
UACACUAUCACUACGCAGAC^     A     A       A     GUU    ACUGUUCC 
 .       110       100        90        80        70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-216-P2a1_5p
mirBase accessionMIMAT0019527
Sequence 
0- AAAUCUCUGCAGGCAACUGUGG -22
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Star sequence

Pma-Mir-216-P2a1_3p* (predicted)
mirBase accessionNone
Sequence 
39- ACAUUGGCCUGAAGGGAUUAUA -61
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