Mir-216-P2a

MirGeneDB ID

Mmu-Mir-216-P2a

Family name

MIR-216 (all species)

Seed

AAUCUCU

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-216b

Paralogues

Mmu-Mir-216-P2b

Orthologues

Aae-Mir-216-P2 Aca-Mir-216-P2a Ami-Mir-216-P2a Asu-Mir-216-P2 Bfl-Mir-216-P2 Bge-Mir-216-P2 Bla-Mir-216-P2 Bpl-Mir-216-P2 Bta-Mir-216-P2a Cbr-Mir-216-P2 Cel-Mir-216-P2 Cfa-Mir-216-P2a Cgi-Mir-216-P2 Cli-Mir-216-P2a Cmi-Mir-216-P2a Cpi-Mir-216-P2a Cpo-Mir-216-P2a Dan-Mir-216-P2 Dma-Mir-216-P2 Dme-Mir-216-P2 Dmo-Mir-216-P2 Dno-Mir-216-P2a Dpu-Mir-216-P2 Dre-Mir-216-P2a Dsi-Mir-216-P2 Dya-Mir-216-P2 Ebu-Mir-216-P2a2 Efe-Mir-216-P2 Ete-Mir-216-P2a Gga-Mir-216-P2a Gja-Mir-216-P2a Gmo-Mir-216-P2a Hme-Mir-216-P2 Hsa-Mir-216-P2a Isc-Mir-216-P2 Lch-Mir-216-P2a Lgi-Mir-216-P2 Loc-Mir-216-P2a Mal-Mir-216-P2a Mdo-Mir-216-P2a Mml-Mir-216-P2a Oan-Mir-216-P2a Ocu-Mir-216-P2a Pbv-Mir-216-P2a Pma-Mir-216-P2a1 Pma-Mir-216-P2a2 Rno-Mir-216-P2a Sha-Mir-216-P2a Spt-Mir-216-P2a Sto-Mir-216-P2a Tca-Mir-216-P2 Tgu-Mir-216-P2a Tni-Mir-216-P2a

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(mm10)

chr11: 28746204-28746265 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-216-P2a)

Mir-216-P2a chr11: 28746204-28746265 [+] UCSC Ensembl
Mir-216-P2b chr11: 28757018-28757079 [+] UCSC Ensembl
Mir-217-v2 chr11: 28763760-28763820 [+] UCSC Ensembl
Mir-217-v1 chr11: 28763761-28763819 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUAGAUGUAAUUGCACAUUGGCAGACUGGGAAAUCUCUGCAGGCAAAUGUGAUGUCACUGAAGAAACCACACACUUACCUGUAGAGAUUCUUCAGUCUGACAACAUCAAGCAUCAAACCCCU

Get precursor sequence

Structure

        10          20        30        40        50        60
UUAGAUGUAAUUGCACA--|  G        GA            C  A    AUGUCACU 
                   UUG CAGACUGG  AAUCUCUGCAGG AA UGUG        G
                   AAC GUCUGACU  UUAGAGAUGUCC UU ACAC        A
UCCCCAAACUACGAACUAC^  A        UC            A  C    ACCAAAGA 
120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

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Mature sequence

Mmu-Mir-216-P2a_5p

mirBase accession

MIMAT0003729

Sequence

0- AAAUCUCUGCAGGCAAAUGUGA -22

Get sequence

Proposed targets

microrna.org: MIMAT0003729
TargetScanVert: mmu-miR-216b-5p
miRDB: MIMAT0003729

Star sequence

Mmu-Mir-216-P2a_3p*

mirBase accession

MIMAT0017233

Sequence

40- ACACUUACCUGUAGAGAUUCUU -62

Get sequence

Proposed targets

TargetScanVert: mmu-miR-216b-3p
miRDB: MIMAT0017233