MirGeneDB 3.0
MirGeneDB ID

Isc-Mir-216-P2

Family name MIR-216 (all species)
Seed AAUCUCA
Species Deer tick (Ixodes scapularis)
MiRBase ID isc-mir-5307
Paralogues
Orthologues Aae-Mir-216-P2  Aca-Mir-216-P2a  Aca-Mir-216-P2b  Aga-Mir-216-P2  Agr-Mir-216-P2c  Agr-Mir-216-P2d  Ami-Mir-216-P2a  Ami-Mir-216-P2b  Asu-Mir-216-P2  Ava-Mir-216-P2  Bfl-Mir-216-P2  Bge-Mir-216-P2  Bko-Mir-216-P2  Bla-Mir-216-P2  Bpl-Mir-216-P2  Bta-Mir-216-P2a  Bta-Mir-216-P2b  Cbr-Mir-216-P2  Cel-Mir-216-P2  Cfa-Mir-216-P2a  Cfa-Mir-216-P2b  Cja-Mir-216-P2a  Cja-Mir-216-P2b  Cli-Mir-216-P2a  Cli-Mir-216-P2b  Cmi-Mir-216-P2a  Cmi-Mir-216-P2b  Cpi-Mir-216-P2a  Cpi-Mir-216-P2b  Cpo-Mir-216-P2a  Cpo-Mir-216-P2b  Csc-Mir-216-P2  Cte-Mir-216-P2c  Cte-Mir-216-P2d  Dan-Mir-216-P2  Dgr-Mir-216-P2c  Dlo-Mir-216-P2  Dma-Mir-216-P2  Dme-Mir-216-P2  Dmo-Mir-216-P2  Dno-Mir-216-P2a  Dno-Mir-216-P2b  Dpu-Mir-216-P2  Dre-Mir-216-P2a  Dre-Mir-216-P2b  Dsi-Mir-216-P2  Dya-Mir-216-P2  Eba-Mir-216-P2c  Ebu-Mir-216-P2a2  Ebu-Mir-216-P2b1  Eca-Mir-216-P2a  Eca-Mir-216-P2b  Efe-Mir-216-P2c  Esc-Mir-216-P2d  Ete-Mir-216-P2a  Ete-Mir-216-P2b  Gga-Mir-216-P2a  Gga-Mir-216-P2b  Gja-Mir-216-P2a  Gja-Mir-216-P2b  Gmo-Mir-216-P2a  Gmo-Mir-216-P2b  Hme-Mir-216-P2  Hru-Mir-216-P2d  Hsa-Mir-216-P2a  Hsa-Mir-216-P2b  Laf-Mir-216-P2a  Laf-Mir-216-P2b  Lan-Mir-216-P2d1  Lan-Mir-216-P2d2  Lch-Mir-216-P2a  Lch-Mir-216-P2b  Lgi-Mir-216-P2d  Lhy-Mir-216-P2c  Lhy-Mir-216-P2d  Llo-Mir-216-P2c  Llo-Mir-216-P2d  Loc-Mir-216-P2a  Loc-Mir-216-P2b  Lpo-Mir-216-P2g  Lpo-Mir-216-P2h  Lpo-Mir-216-P2i  Mal-Mir-216-P2a  Mal-Mir-216-P2b  Mdo-Mir-216-P2a  Mdo-Mir-216-P2b  Mgi-Mir-216-P2d  Mml-Mir-216-P2a  Mml-Mir-216-P2b  Mmr-Mir-216-P2a  Mmr-Mir-216-P2b  Mmu-Mir-216-P2a  Mmu-Mir-216-P2b  Mom-Mir-216-P2c  Mom-Mir-216-P2d  Mun-Mir-216-P2b  Neu-Mir-216-P2a  Neu-Mir-216-P2b  Npo-Mir-216-P2c  Npo-Mir-216-P2d  Oan-Mir-216-P2a  Oan-Mir-216-P2b  Obi-Mir-216-P2c  Obi-Mir-216-P2d  Ocu-Mir-216-P2a  Ocu-Mir-216-P2b  Ofu-Mir-216-P2c  Ofu-Mir-216-P2d  Ovu-Mir-216-P2c  Ovu-Mir-216-P2d  Pab-Mir-216-P2a  Pab-Mir-216-P2b  Pau-Mir-216-P2c  Pau-Mir-216-P2d  Pbv-Mir-216-P2a  Pbv-Mir-216-P2b  Pca-Mir-216-P2  Pcr-Mir-216-P2o1-v1  Pcr-Mir-216-P2o1-v2  Pcr-Mir-216-P2o2  Pdu-Mir-216-P2d  Pma-Mir-216-P2a1  Pma-Mir-216-P2a2  Pma-Mir-216-P2b1  Pve-Mir-216-P2d  Rno-Mir-216-P2a  Rno-Mir-216-P2b  Rph-Mir-216-P2d  Sha-Mir-216-P2a  Sha-Mir-216-P2b  Sme-Mir-216-P2e  Sme-Mir-216-P2f  Snu-Mir-216-P2c  Snu-Mir-216-P2d  Spt-Mir-216-P2a  Spt-Mir-216-P2b  Sto-Mir-216-P2a  Sto-Mir-216-P2b  Tca-Mir-216-P2  Tgu-Mir-216-P2a  Tgu-Mir-216-P2b  Tni-Mir-216-P2a  Tni-Mir-216-P2b  Tur-Mir-216-P2  War-Mir-216-P2c  Xla-Mir-216-P2b3  Xla-Mir-216-P2b4  Xtr-Mir-216-P2b 
Node of Origin (locus) Nephrozoa
Node of Origin (family) Nephrozoa
Genome context
(GCF_016920785.2_ASM1692078v2_ISC)		 NW_024609836.1: 71439542-71439601 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-216-P2)		 Mir-216-P2 NW_024609836.1: 71439542-71439601 [+] Ensembl
Mir-12 NW_024609836.1: 71440117-71440176 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GACCCCCUGCACUGGCGCCUUCCGGAGGCCUAAUCUCAUUUGGUAUCUCUGGGGGGCUGAGCGACGUCCAGGGUACCAGAUGAGAUGGGGUCUCGGGGAGCACCCCCAUGCAUGACGCAG
Get precursor sequence
Structure
        10          20        30        40        50          
GACCCCCUGCACUGGCGC--|    G       A               U     GGGCUG 
                    CUUCC GAGGCCU AUCUCAUUUGGUAUC CUGGG      \
                    GAGGG CUCUGGG UAGAGUAGACCAUGG GACCU      A
GACGCAGUACGUACCCCCAC^    G       G               -     GCAGCG 
.       110       100        90        80         70
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
-   +
Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Em Sa Sa To
Mature sequence

Isc-Mir-216-P2_5p
mirBase accessionMIMAT0021377
Sequence 
0- UAAUCUCAUUUGGUAUCUCUGGG -23
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Star sequence

Isc-Mir-216-P2_3p* (predicted)
mirBase accessionNone
Sequence 
38- CAGGGUACCAGAUGAGAUGGGG -60
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