MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-216-P2b

Family name MIR-216 (all species)
Seed AAUCUCA
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-216
Paralogues
Orthologues Aae-Mir-216-P2  Aca-Mir-216-P2b  Aga-Mir-216-P2  Ami-Mir-216-P2b  Asu-Mir-216-P2  Ava-Mir-216-P2  Bfl-Mir-216-P2  Bge-Mir-216-P2  Bko-Mir-216-P2  Bla-Mir-216-P2  Bpl-Mir-216-P2  Bta-Mir-216-P2b  Cbr-Mir-216-P2  Cel-Mir-216-P2  Cfa-Mir-216-P2b  Cja-Mir-216-P2b  Cli-Mir-216-P2b  Cmi-Mir-216-P2b  Cpi-Mir-216-P2b  Cpo-Mir-216-P2b  Csc-Mir-216-P2  Dan-Mir-216-P2  Dlo-Mir-216-P2  Dma-Mir-216-P2  Dme-Mir-216-P2  Dmo-Mir-216-P2  Dno-Mir-216-P2b  Dpu-Mir-216-P2  Dre-Mir-216-P2b  Dsi-Mir-216-P2  Dya-Mir-216-P2  Ebu-Mir-216-P2b1  Eca-Mir-216-P2b  Ete-Mir-216-P2b  Gga-Mir-216-P2b  Gja-Mir-216-P2b  Gmo-Mir-216-P2b  Hme-Mir-216-P2  Hsa-Mir-216-P2b  Isc-Mir-216-P2  Laf-Mir-216-P2b  Lch-Mir-216-P2b  Loc-Mir-216-P2b  Mal-Mir-216-P2b  Mdo-Mir-216-P2b  Mml-Mir-216-P2b  Mmr-Mir-216-P2b  Mmu-Mir-216-P2b  Mun-Mir-216-P2b  Neu-Mir-216-P2b  Oan-Mir-216-P2b  Ocu-Mir-216-P2b  Pab-Mir-216-P2b  Pbv-Mir-216-P2b  Pca-Mir-216-P2  Pma-Mir-216-P2b1  Rno-Mir-216-P2b  Sha-Mir-216-P2b  Spt-Mir-216-P2b  Sto-Mir-216-P2b  Tca-Mir-216-P2  Tgu-Mir-216-P2b  Tni-Mir-216-P2b  Tur-Mir-216-P2  Xla-Mir-216-P2b3  Xla-Mir-216-P2b4 
Node of Origin (locus) Vertebrata
Node of Origin (family) Nephrozoa
Genome context
(xenTro9_add)		 chr5: 26049038-26049099 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-216-P2b)		 Mir-217-v2 chr5: 26048672-26048732 [-] UCSC Ensembl
Mir-217-v1 chr5: 26048673-26048731 [-] UCSC Ensembl
Mir-216-P2b chr5: 26049038-26049099 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACGGCUAAGCUAAAUGGCUGUGAAUUGGCUUAAUCUCAGCUGGCAACUGUGAGCAGUUAAUAAAUUAUCUCACAGUGGUCUCUGGGAUUAUACUAAACACAGCAAUUCUCUUGCUUUAUGGA
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Structure
        10           20        30        40        50        60 
ACGGCUAAGCUAAAUGG---|    AA    CU         CU   A        CAGUUAA 
                    CUGUG  UUGG  UAAUCUCAG  GGC ACUGUGAG       \
                    GACAC  AAUC  AUUAGGGUC  CUG UGACACUC       U
AGGUAUUUCGUUCUCUUAAC^    A-    AU         U-   G        UAUUAAA 
120       110       100         90         80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-216-P2b_5p
mirBase accessionMIMAT0003629
Sequence 
0- UAAUCUCAGCUGGCAACUGUGAG -23
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Proposed targets TargetScanVert: xtr-miR-216
Star sequence

Xtr-Mir-216-P2b_3p*
mirBase accessionNone
Sequence 
40- CACAGUGGUCUCUGGGAUUAUA -62
Get sequence