MirGeneDB 2.1

MirGeneDB ID

Asu-Mir-216-P2

Family name MIR-216 (all species)
Seed AAUCUCG
Species Large roundworm (Ascaris suum)
MiRBase ID asu-mir-5362
Paralogues Asu-Mir-216-P1 
Orthologues Aae-Mir-216-P2  Aca-Mir-216-P2a  Aca-Mir-216-P2b  Ami-Mir-216-P2a  Ami-Mir-216-P2b  Bfl-Mir-216-P2  Bge-Mir-216-P2  Bla-Mir-216-P2  Bpl-Mir-216-P2  Bta-Mir-216-P2a  Bta-Mir-216-P2b  Cbr-Mir-216-P2  Cel-Mir-216-P2  Cfa-Mir-216-P2a  Cfa-Mir-216-P2b  Cgi-Mir-216-P2  Cli-Mir-216-P2a  Cli-Mir-216-P2b  Cmi-Mir-216-P2a  Cmi-Mir-216-P2b  Cpi-Mir-216-P2a  Cpi-Mir-216-P2b  Cpo-Mir-216-P2a  Cpo-Mir-216-P2b  Cte-Mir-216-P2c  Cte-Mir-216-P2d  Dan-Mir-216-P2  Dma-Mir-216-P2  Dme-Mir-216-P2  Dmo-Mir-216-P2  Dno-Mir-216-P2a  Dno-Mir-216-P2b  Dpu-Mir-216-P2  Dre-Mir-216-P2a  Dre-Mir-216-P2b  Dsi-Mir-216-P2  Dya-Mir-216-P2  Ebu-Mir-216-P2a2  Ebu-Mir-216-P2b1  Efe-Mir-216-P2  Esc-Mir-216-P2k  Ete-Mir-216-P2a  Ete-Mir-216-P2b  Gga-Mir-216-P2a  Gga-Mir-216-P2b  Gja-Mir-216-P2a  Gja-Mir-216-P2b  Gmo-Mir-216-P2a  Gmo-Mir-216-P2b  Hme-Mir-216-P2  Hsa-Mir-216-P2a  Hsa-Mir-216-P2b  Isc-Mir-216-P2  Lan-Mir-216-P2e  Lan-Mir-216-P2f  Lch-Mir-216-P2a  Lch-Mir-216-P2b  Lgi-Mir-216-P2  Loc-Mir-216-P2a  Loc-Mir-216-P2b  Lpo-Mir-216-P2g  Lpo-Mir-216-P2h  Lpo-Mir-216-P2i  Mal-Mir-216-P2a  Mal-Mir-216-P2b  Mdo-Mir-216-P2a  Mdo-Mir-216-P2b  Mml-Mir-216-P2a  Mml-Mir-216-P2b  Mmu-Mir-216-P2a  Mmu-Mir-216-P2b  Mun-Mir-216-P2b  Npo-Mir-216-P2j  Npo-Mir-216-P2k  Oan-Mir-216-P2a  Oan-Mir-216-P2b  Obi-Mir-216-P2j  Obi-Mir-216-P2k  Ocu-Mir-216-P2a  Ocu-Mir-216-P2b  Ovu-Mir-216-P2j  Ovu-Mir-216-P2k  Pbv-Mir-216-P2a  Pbv-Mir-216-P2b  Pma-Mir-216-P2a1  Pma-Mir-216-P2a2  Pma-Mir-216-P2b1  Rno-Mir-216-P2a  Rno-Mir-216-P2b  Sha-Mir-216-P2a  Sha-Mir-216-P2b  Sme-Mir-216-P2l  Sme-Mir-216-P2m  Spt-Mir-216-P2a  Spt-Mir-216-P2b  Sto-Mir-216-P2a  Sto-Mir-216-P2b  Tca-Mir-216-P2  Tgu-Mir-216-P2a  Tgu-Mir-216-P2b  Tni-Mir-216-P2a  Tni-Mir-216-P2b  Xla-Mir-216-P2b3  Xla-Mir-216-P2b4  Xtr-Mir-216-P2b 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(ASU_PRJNA80881_plustraces)
Scaffold36: 852366-852422 [+]
Clustered miRNAs
(< 50kb from Mir-216-P2)
Mir-216-P1 Scaffold36: 852176-852234 [+]
Mir-216-P2 Scaffold36: 852366-852422 [+]
Precursor
(pre-Mir +30nt flank)
UCGCCAUUUUCUUCGAUGAGAUGUGCAGUUAAAUCUCGUCCGGUAGUAUAUGCGAGUUGAAAAGCAUUGCAACCGGUGGAGAUUCCACUGACUUCUCUAUUUUCAAAGCAUGAAUCC
Get precursor sequence
Structure
        10           20        30        40        50        
UCGCCAUUUUCUUCGAU---|   U  G    UA      GU     A   U    GAGU 
                    GAGA GU CAGU  AAUCUC  CCGGU GUA AUGC    U
                    CUCU CA GUCA  UUAGAG  GGCCA CGU UACG    G
CCUAAGUACGAAACUUUUAU^   U  -    CC      GU     A   -    AAAA 
     110       100         90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
0h 11 12 24 46 64 6d 7d 8d 96 Em La Ov Se Sp Te Zy
Mature sequence

Asu-Mir-216-P2_5p

mirBase accessionMIMAT0021586
Sequence
0- AAAUCUCGUCCGGUAGUAUAUGC -23
Get sequence
Star sequence

Asu-Mir-216-P2_3p*

mirBase accessionMIMAT0021587
Sequence
35- AUUGCAACCGGUGGAGAUUCCA -57
Get sequence