MirGeneDB 3.0

MirGeneDB ID

Lgi-Mir-216-P2d

Family name MIR-216 (all species)
Seed AAUCUCA
Species Owl limpet (Lottia gigantea)
MiRBase ID lgi-mir-216a
Paralogues Lgi-Mir-216-P1 
Orthologues Aae-Mir-216-P2  Aga-Mir-216-P2  Agr-Mir-216-P2d  Asu-Mir-216-P2  Ava-Mir-216-P2  Bfl-Mir-216-P2  Bge-Mir-216-P2  Bko-Mir-216-P2  Bla-Mir-216-P2  Bpl-Mir-216-P2  Cbr-Mir-216-P2  Cel-Mir-216-P2  Csc-Mir-216-P2  Cte-Mir-216-P2d  Dan-Mir-216-P2  Dlo-Mir-216-P2  Dma-Mir-216-P2  Dme-Mir-216-P2  Dmo-Mir-216-P2  Dpu-Mir-216-P2  Dsi-Mir-216-P2  Dya-Mir-216-P2  Esc-Mir-216-P2d  Hme-Mir-216-P2  Hru-Mir-216-P2d  Isc-Mir-216-P2  Lan-Mir-216-P2d1  Lan-Mir-216-P2d2  Lhy-Mir-216-P2d  Llo-Mir-216-P2d  Mgi-Mir-216-P2d  Mom-Mir-216-P2d  Npo-Mir-216-P2d  Obi-Mir-216-P2d  Ofu-Mir-216-P2d  Ovu-Mir-216-P2d  Pau-Mir-216-P2d  Pca-Mir-216-P2  Pdu-Mir-216-P2d  Pve-Mir-216-P2d  Rph-Mir-216-P2d  Snu-Mir-216-P2d  Tca-Mir-216-P2  Tur-Mir-216-P2 
Node of Origin (locus) Lophotrochozoa
Node of Origin (family) Nephrozoa
Genome context
(Lotgi1)
LOTGIsca_22: 807335-807401 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-216-P2d)
Mir-216-P1 LOTGIsca_22: 805723-805780 [+] Ensembl
Mir-216-P2d LOTGIsca_22: 807335-807401 [+] Ensembl
Mir-12 LOTGIsca_22: 809271-809328 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UGUGAUUGACAGCUAAUCUUGAUGUUUGUGUAAUCUCAGCUGGUAAUUCUGAGUUCUAAUAAAUACUAAUUUUCUCAAGUUACUUGCCGAGAUUAUAUAAAUAUUACGUUAUACAGCAUGAGUUUAA
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Structure
        10          20        30        40        50        60   
UGUGAUUGACAGCUAAUCU--|                 A  U       C    UUCUAAUAA 
                     UGAUGUUUGUGUAAUCUC GC GGUAAUU UGAG         A
                     AUUAUAAAUAUAUUAGAG CG UCAUUGA ACUC         U
AAUUUGAGUACGACAUAUUGC^                 C  U       -    UUUUAAUCA 
     120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Lgi-Mir-216-P2d_5p

mirBase accessionMIMAT0009588
Sequence
0- UAAUCUCAGCUGGUAAUUCUGAG -23
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Star sequence

Lgi-Mir-216-P2d_3p*

mirBase accessionNone
Sequence
45- CAAGUUACUUGCCGAGAUUAUA -67
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