Mir-216-P2

MirGeneDB ID

Bfl-Mir-216-P2

Family name

MIR-216 (all species)

Seed

AAUCUCA

Species

Florida lancelet (Branchiostoma floridae)

MiRBase ID

bfl-mir-216

Paralogues

Orthologues

Aae-Mir-216-P2 Aca-Mir-216-P2a Aca-Mir-216-P2b Ami-Mir-216-P2a Ami-Mir-216-P2b Asu-Mir-216-P2 Bge-Mir-216-P2 Bla-Mir-216-P2 Bpl-Mir-216-P2 Bta-Mir-216-P2a Bta-Mir-216-P2b Cbr-Mir-216-P2 Cel-Mir-216-P2 Cfa-Mir-216-P2a Cfa-Mir-216-P2b Cgi-Mir-216-P2 Cli-Mir-216-P2a Cli-Mir-216-P2b Cmi-Mir-216-P2a Cmi-Mir-216-P2b Cpi-Mir-216-P2a Cpi-Mir-216-P2b Cpo-Mir-216-P2a Cpo-Mir-216-P2b Cte-Mir-216-P2c Cte-Mir-216-P2d Dan-Mir-216-P2 Dma-Mir-216-P2 Dme-Mir-216-P2 Dmo-Mir-216-P2 Dno-Mir-216-P2a Dno-Mir-216-P2b Dpu-Mir-216-P2 Dre-Mir-216-P2a Dre-Mir-216-P2b Dsi-Mir-216-P2 Dya-Mir-216-P2 Ebu-Mir-216-P2a2 Ebu-Mir-216-P2b1 Efe-Mir-216-P2 Esc-Mir-216-P2k Ete-Mir-216-P2a Ete-Mir-216-P2b Gga-Mir-216-P2a Gga-Mir-216-P2b Gja-Mir-216-P2a Gja-Mir-216-P2b Gmo-Mir-216-P2a Gmo-Mir-216-P2b Hme-Mir-216-P2 Hsa-Mir-216-P2a Hsa-Mir-216-P2b Isc-Mir-216-P2 Lan-Mir-216-P2e Lan-Mir-216-P2f Lch-Mir-216-P2a Lch-Mir-216-P2b Lgi-Mir-216-P2 Loc-Mir-216-P2a Loc-Mir-216-P2b Lpo-Mir-216-P2g Lpo-Mir-216-P2h Lpo-Mir-216-P2i Mal-Mir-216-P2a Mal-Mir-216-P2b Mdo-Mir-216-P2a Mdo-Mir-216-P2b Mml-Mir-216-P2a Mml-Mir-216-P2b Mmu-Mir-216-P2a Mmu-Mir-216-P2b Mun-Mir-216-P2b Npo-Mir-216-P2j Npo-Mir-216-P2k Oan-Mir-216-P2a Oan-Mir-216-P2b Obi-Mir-216-P2j Obi-Mir-216-P2k Ocu-Mir-216-P2a Ocu-Mir-216-P2b Ovu-Mir-216-P2j Ovu-Mir-216-P2k Pbv-Mir-216-P2a Pbv-Mir-216-P2b Pma-Mir-216-P2a1 Pma-Mir-216-P2a2 Pma-Mir-216-P2b1 Rno-Mir-216-P2a Rno-Mir-216-P2b Sha-Mir-216-P2a Sha-Mir-216-P2b Sme-Mir-216-P2l Sme-Mir-216-P2m Spt-Mir-216-P2a Spt-Mir-216-P2b Sto-Mir-216-P2a Sto-Mir-216-P2b Tca-Mir-216-P2 Tgu-Mir-216-P2a Tgu-Mir-216-P2b Tni-Mir-216-P2a Tni-Mir-216-P2b Xla-Mir-216-P2b3 Xla-Mir-216-P2b4 Xtr-Mir-216-P2b

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)

NC_049979.1: 16400702-16400762 [-] UCSC

Clustered miRNAs
(< 50kb from Mir-216-P2)

Mir-217 NC_049979.1: 16399807-16399863 [-] UCSC
Mir-216-P2 NC_049979.1: 16400702-16400762 [-] UCSC

Precursor
(pre-Mir +30nt flank)

UGUGGGUGUGGCCCUGUAUGGAUGGUUGUGUAAUCUCAGCUGGCAACUGUGAGUCUAACUUCACAUCCUCACGGUGCAAGCUGGGAUCGCUCAAACUUCUCAACUCUGCUUCAGUCCUUUU

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Structure

        10         20         30        40        50        60
UGUGGGUGUGGCCCUGUA-   AU    GU-|UA         G   A       UCUAAC 
                   UGG  GGUU   G  AUCUCAGCU GCA CUGUGAG      U
                   ACU  UCAA   C  UAGGGUCGA CGU GGCACUC      U
UUUUCCUGACUUCGUCUCA   CU    ACU^GC         A   -       CUACAC 
 .       110       100        90        80         70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Bfl-Mir-216-P2_5p

mirBase accession

MIMAT0009495

Sequence

0- UAAUCUCAGCUGGCAACUGUGAG -23

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Co-mature sequence

Bfl-Mir-216-P2_3p

mirBase accession

MIMAT0019150

Sequence

39- CACGGUGCAAGCUGGGAUCGCU -61

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