Mir-216-P2c

MirGeneDB ID

Mom-Mir-216-P2c

Family name

MIR-216 (all species)

Seed

AAGUUAC

Species

Mossy chiton (Mopalia muscosa)

MiRBase ID

Paralogues

Mom-Mir-216-P1 Mom-Mir-216-P2d

Orthologues

Aae-Mir-216-P2 Aga-Mir-216-P2 Agr-Mir-216-P2c Asu-Mir-216-P2 Ava-Mir-216-P2 Bfl-Mir-216-P2 Bge-Mir-216-P2 Bko-Mir-216-P2 Bla-Mir-216-P2 Bpl-Mir-216-P2 Cbr-Mir-216-P2 Cel-Mir-216-P2 Csc-Mir-216-P2 Cte-Mir-216-P2c Dan-Mir-216-P2 Dgr-Mir-216-P2c Dlo-Mir-216-P2 Dma-Mir-216-P2 Dme-Mir-216-P2 Dmo-Mir-216-P2 Dpu-Mir-216-P2 Dsi-Mir-216-P2 Dya-Mir-216-P2 Eba-Mir-216-P2c Efe-Mir-216-P2c Hme-Mir-216-P2 Isc-Mir-216-P2 Lhy-Mir-216-P2c Llo-Mir-216-P2c Npo-Mir-216-P2c Obi-Mir-216-P2c Ofu-Mir-216-P2c Ovu-Mir-216-P2c Pau-Mir-216-P2c Pca-Mir-216-P2 Snu-Mir-216-P2c Tca-Mir-216-P2 Tur-Mir-216-P2 War-Mir-216-P2c

Node of Origin (locus)

Lophotrochozoa

Node of Origin (family)

Bilateria

Genome context
(GCA_031763545.1_ASM3176354v1_genomic_Mom)

JARFOD010000002.1: 580431-580491 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

UGUUGUGGUGUUUUCUUGUAGAUGUUUGUAUAAUCUCAGCUGGUAAUUCUGAGUCUGCGUCGGACAUCUCAAGUUACUAGCCGAGAUUACACAUACCUCUAUCUUAUCAGCAUGGCAGCAC

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Structure

        10          20        30        40        50        60
UGUUGUGGUGUUUUCUU--|    U  U   A       A          C    UCUGCG 
                   GUAGA GU UGU UAAUCUC GCUGGUAAUU UGAG      U
                   UAUCU CA ACA AUUAGAG CGAUCAUUGA ACUC      C
CACGACGGUACGACUAUUC^    C  U   C       C          -    UACAGG 
 .       110       100        90        80         70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Is

Star sequence

Mom-Mir-216-P2c_5p*

mirBase accession

None

Sequence

0- UAAUCUCAGCUGGUAAUUCUGAG -23

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Mature sequence

Mom-Mir-216-P2c_3p

mirBase accession

None

Sequence

39- CAAGUUACUAGCCGAGAUUACA -61

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