MirGeneDB 3.0
MirGeneDB ID

Efe-Mir-216-P2c

Family name MIR-216 (all species)
Seed AAUCUCA
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-216-P1a  Efe-Mir-216-P1b 
Orthologues Aae-Mir-216-P2  Aga-Mir-216-P2  Agr-Mir-216-P2c  Asu-Mir-216-P2  Ava-Mir-216-P2  Bfl-Mir-216-P2  Bge-Mir-216-P2  Bko-Mir-216-P2  Bla-Mir-216-P2  Bpl-Mir-216-P2  Cbr-Mir-216-P2  Cel-Mir-216-P2  Csc-Mir-216-P2  Cte-Mir-216-P2c  Dan-Mir-216-P2  Dgr-Mir-216-P2c  Dlo-Mir-216-P2  Dma-Mir-216-P2  Dme-Mir-216-P2  Dmo-Mir-216-P2  Dpu-Mir-216-P2  Dsi-Mir-216-P2  Dya-Mir-216-P2  Eba-Mir-216-P2c  Hme-Mir-216-P2  Isc-Mir-216-P2  Lhy-Mir-216-P2c  Llo-Mir-216-P2c  Mom-Mir-216-P2c  Npo-Mir-216-P2c  Obi-Mir-216-P2c  Ofu-Mir-216-P2c  Ovu-Mir-216-P2c  Pau-Mir-216-P2c  Pca-Mir-216-P2  Snu-Mir-216-P2c  Tca-Mir-216-P2  Tur-Mir-216-P2  War-Mir-216-P2c 
Node of Origin (locus) Lophotrochozoa
Node of Origin (family) Nephrozoa
Genome context
(Efe_combined)		 Efet.01.28683: 1127-1187 [+]
Precursor
(pre-Mir +30nt flank)
ACGACUGCAUGGAAGUUGAGGGAUCUGGUUUAAUCUCAGCAGGUAGUGAUGAGUGUCGUCUGAAAAUCUCAUGAUGUCUGCUGGGAUGAGACUAAUCUCUACUCUCAACGCGCUUCACCUG
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Structure
        10           20        30        40        50        60
ACGACUGCAUGGAAGUUG---|     C      A          GU G G     UGUCGU 
                     AGGGAU UGGUUU AUCUCAGCAG  A U AUGAG      C
                     UCUCUA AUCAGA UAGGGUCGUC  U A UACUC      U
GUCCACUUCGCGCAACUCUCA^     -      G          UG - G     UAAAAG 
 .       110       100         90        80         70
Deep sequencing
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CommentThere are Dicer cuts +1 and -1.
3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
-   +
To
Mature sequence

Efe-Mir-216-P2c_5p
mirBase accessionNone
Sequence 
0- UAAUCUCAGCAGGUAGUGAUGAG -23
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Star sequence

Efe-Mir-216-P2c_3p*
mirBase accessionNone
Sequence 
39- CAUGAUGUCUGCUGGGAUGAGA -61
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