MirGeneDB 3.0
MirGeneDB ID

Efe-Mir-216-P1b

Family name MIR-216 (all species)
Seed AAUAUCA
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-216-P1a  Efe-Mir-216-P2c 
Orthologues Aae-Mir-216-P1  Aga-Mir-216-P1  Agr-Mir-216-P1  Asu-Mir-216-P1  Bge-Mir-216-P1  Cte-Mir-216-P1  Dan-Mir-216-P1  Dgr-Mir-216-P1  Dlo-Mir-216-P1  Dma-Mir-216-P1  Dme-Mir-216-P1  Dmo-Mir-216-P1  Dpu-Mir-216-P1  Dsi-Mir-216-P1  Dya-Mir-216-P1  Eba-Mir-216-P1  Esc-Mir-216-P1  Gpa-Mir-216-P1  Hme-Mir-216-P1  Hru-Mir-216-P1  Lgi-Mir-216-P1  Lhy-Mir-216-P1  Mgi-Mir-216-P1  Mom-Mir-216-P1  Ofu-Mir-216-P1  Pau-Mir-216-P1  Pca-Mir-216-P1  Pcr-Mir-216-P1  Pdu-Mir-216-P1  Pve-Mir-216-P1  Rph-Mir-216-P1  Sma-Mir-216-P1  Snu-Mir-216-P1  Tca-Mir-216-P1  War-Mir-216-P1 
Node of Origin (locus) E. fetida
Node of Origin (family) Nephrozoa
Genome context
(Efe_combined)		 Efet.01.65362: 517-605 [-]
Precursor
(pre-Mir +30nt flank)
AUUCAGGUAUCGAUGAUGAUAGCGUCUGGCUAAUAUCAGCAGGUAAAUCGGAGAUCUGCCUCAGCGUCCUUCGCUGGUACGGCAUCAGGAGAAAACUCCGGAUGCCUACUGGUAUUAGGCGGACGCGUCUGACUGCAGCCAAAAGCAUC
Get precursor sequence
Structure
        10           20        30        40        50        60        70    
AUUCAGGUAUCGAUGAU---|  A       G          C     AA      AUCUGCCUCAGCGUCCUUCG 
                    GAU GCGUCUG CUAAUAUCAG AGGUA  UCGGAG                    C
                    CUG CGCAGGC GAUUAUGGUC UCCGU  GGCCUC                    U
CUACGAAAACCGACGUCAGU^  -       G          A     A-      AAAAGAGGACUACGGCAUGG 
       140       130        120       110        100        90        80
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Efe-Mir-216-P1b_5p
mirBase accessionNone
Sequence 
0- UAAUAUCAGCAGGUAAAUCGGAG -23
Get sequence
Star sequence

Efe-Mir-216-P1b_3p*
mirBase accessionNone
Sequence 
67- CCGGAUGCCUACUGGUAUUAGG -89
Get sequence