MirGeneDB 3.0
MirGeneDB ID

Rph-Mir-216-P1

Family name MIR-216 (all species)
Seed AAUAUCA
Species Japanese carpet shell (Ruditapes philippinarum)
MiRBase ID
Paralogues Rph-Mir-216-P2d 
Orthologues Aae-Mir-216-P1  Aga-Mir-216-P1  Agr-Mir-216-P1  Asu-Mir-216-P1  Bge-Mir-216-P1  Cte-Mir-216-P1  Dan-Mir-216-P1  Dgr-Mir-216-P1  Dlo-Mir-216-P1  Dma-Mir-216-P1  Dme-Mir-216-P1  Dmo-Mir-216-P1  Dpu-Mir-216-P1  Dsi-Mir-216-P1  Dya-Mir-216-P1  Eba-Mir-216-P1  Efe-Mir-216-P1a  Efe-Mir-216-P1b  Esc-Mir-216-P1  Gpa-Mir-216-P1  Hme-Mir-216-P1  Hru-Mir-216-P1  Lan-Mir-216-P1e  Lan-Mir-216-P1f  Lgi-Mir-216-P1  Lhy-Mir-216-P1  Mgi-Mir-216-P1  Mom-Mir-216-P1  Ofu-Mir-216-P1  Pau-Mir-216-P1  Pca-Mir-216-P1  Pcr-Mir-216-P1  Pdu-Mir-216-P1  Pve-Mir-216-P1  Sma-Mir-216-P1  Snu-Mir-216-P1  Tca-Mir-216-P1  War-Mir-216-P1 
Node of Origin (locus) Bilateria
Node of Origin (family) Nephrozoa
Genome context
(Ruditapes_GCA_009026015)		 CM018538.1: 42663442-42663499 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UAUGAAGACUUUAAAAUUUGUUUGGUUGUUUAAUAUCAGCUGGUAAUCCUGAGUGUUCUCUUGUCUCAGGCUGUCAGUUGAUAUUGUACAAACAGACAGACAAACACCGGUAAGGGCA
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Structure
        10          20        30        40        50         
UAUGAAGACUUUAAAAU--|      G    U            GU AU      UGUUC 
                   UUGUUUG UUGU UAAUAUCAGCUG  A  CCUGAG     \
                   GACAGAC AACA GUUAUAGUUGAC  U  GGACUC     U
ACGGGAAUGGCCACAAACA^      A    U            UG C-      UGUUC 
      110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru
Mature sequence

Rph-Mir-216-P1_5p
mirBase accessionNone
Sequence 
0- UAAUAUCAGCUGGUAAUCCUGAG -23
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Star sequence

Rph-Mir-216-P1_3p*
mirBase accessionNone
Sequence 
36- CAGGCUGUCAGUUGAUAUUGUA -58
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