MirGeneDB ID | Hru-Mir-216-P1 |
Family name |
MIR-216 (all species) |
Seed |
AAUAUCA |
Species |
Red Abalone (Haliotis rufescens) |
MiRBase ID |
|
Paralogues |
Hru-Mir-216-P2d
|
Orthologues |
Aae-Mir-216-P1
Aga-Mir-216-P1
Agr-Mir-216-P1
Asu-Mir-216-P1
Bge-Mir-216-P1
Cte-Mir-216-P1
Dan-Mir-216-P1
Dgr-Mir-216-P1
Dlo-Mir-216-P1
Dma-Mir-216-P1
Dme-Mir-216-P1
Dmo-Mir-216-P1
Dpu-Mir-216-P1
Dsi-Mir-216-P1
Dya-Mir-216-P1
Eba-Mir-216-P1
Efe-Mir-216-P1a
Efe-Mir-216-P1b
Esc-Mir-216-P1
Gpa-Mir-216-P1
Hme-Mir-216-P1
Lan-Mir-216-P1e
Lan-Mir-216-P1f
Lgi-Mir-216-P1
Lhy-Mir-216-P1
Mgi-Mir-216-P1
Mom-Mir-216-P1
Ofu-Mir-216-P1
Pau-Mir-216-P1
Pca-Mir-216-P1
Pcr-Mir-216-P1
Pdu-Mir-216-P1
Pve-Mir-216-P1
Rph-Mir-216-P1
Sma-Mir-216-P1
Snu-Mir-216-P1
Tca-Mir-216-P1
War-Mir-216-P1
|
Node of Origin (locus) |
Nephrozoa
|
Node of Origin (family) |
Nephrozoa
|
Genome context (GCA_023055435.1_xgHalRufe1.0.p_genomic_plus_traces) |
JALGQA010000003.1: 15754732-15754788 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
ACAGAUUUUGCCAUUCUAAGCCUGGUUUCUUAAUAUCAGCUGGUAAUCCUGAGAGAUCCACGCCUCAGGAUGCUGACUGAUAUAUGGCAAACGGGUACUUGUAUUCCUCGUCACAAC
Get precursor sequence
|
Structure | 10 20 30 40 50
ACAGAUUUUGCCAUUCUAA--| G - UA CU A AGAU
GCCUG UUU CU AUAUCAG GGUA UCCUGAG C
UGGGC AAA GG UAUAGUC UCGU AGGACUC C
CAACACUGCUCCUUAUGUUCA^ - C UA AG - CGCA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Hru-Mir-216-P1_5p |
mirBase accession | None |
Sequence |
0- UAAUAUCAGCUGGUAAUCCUGAG -23
Get sequence
|
Star sequence |
Hru-Mir-216-P1_3p* |
mirBase accession | None |
Sequence |
35- CAGGAUGCUGACUGAUAUAUGG -57
Get sequence
|