Mir-216-P2d

MirGeneDB ID

Hru-Mir-216-P2d

Family name

MIR-216 (all species)

Seed

AAUCUCA

Species

Red Abalone (Haliotis rufescens)

MiRBase ID

Paralogues

Hru-Mir-216-P1

Orthologues

Aae-Mir-216-P2 Aga-Mir-216-P2 Agr-Mir-216-P2d Asu-Mir-216-P2 Ava-Mir-216-P2 Bfl-Mir-216-P2 Bge-Mir-216-P2 Bko-Mir-216-P2 Bla-Mir-216-P2 Bpl-Mir-216-P2 Cbr-Mir-216-P2 Cel-Mir-216-P2 Csc-Mir-216-P2 Cte-Mir-216-P2d Dan-Mir-216-P2 Dlo-Mir-216-P2 Dma-Mir-216-P2 Dme-Mir-216-P2 Dmo-Mir-216-P2 Dpu-Mir-216-P2 Dsi-Mir-216-P2 Dya-Mir-216-P2 Esc-Mir-216-P2d Hme-Mir-216-P2 Isc-Mir-216-P2 Lan-Mir-216-P2d1 Lan-Mir-216-P2d2 Lgi-Mir-216-P2d Lhy-Mir-216-P2d Llo-Mir-216-P2d Mgi-Mir-216-P2d Mom-Mir-216-P2d Npo-Mir-216-P2d Obi-Mir-216-P2d Ofu-Mir-216-P2d Ovu-Mir-216-P2d Pau-Mir-216-P2d Pca-Mir-216-P2 Pdu-Mir-216-P2d Pve-Mir-216-P2d Rph-Mir-216-P2d Snu-Mir-216-P2d Tca-Mir-216-P2 Tur-Mir-216-P2

Node of Origin (locus)

Lophotrochozoa

Node of Origin (family)

Bilateria

Genome context
(GCA_023055435.1_xgHalRufe1.0.p_genomic_plus_traces)

JALGQA010000003.1: 15755123-15755181 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGAAAGGGCUUGCAUGUGUUGAUGUUUGUCUAAUCUCAGCUGGUAAUUCUGAGUAAAAAGGAGGCCUCAAGUUACUAGCCGAGAUUACAUAAAUAUCUUACCGAACAGCAUGGACUAAC

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Structure

        10        20          30        40        50         
UGAAAGGGCUUGCAUGUGUU--|        C       A          C    UAAAA 
                      GAUGUUUGU UAAUCUC GCUGGUAAUU UGAG     A
                      CUAUAAAUA AUUAGAG CGAUCAUUGA ACUC     G
CAAUCAGGUACGACAAGCCAUU^        C       C          -    CGGAG 
       110       100        90        80        70         60

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ha	Ha

Mature sequence

Hru-Mir-216-P2d_5p

mirBase accession

None

Sequence

0- UAAUCUCAGCUGGUAAUUCUGAG -23

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Star sequence

Hru-Mir-216-P2d_3p*

mirBase accession

None

Sequence

37- CAAGUUACUAGCCGAGAUUACA -59

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