MirGeneDB 3.0

MirGeneDB ID

Hru-Mir-216-P2d

Family name MIR-216 (all species)
Seed AAUCUCA
Species Red Abalone (Haliotis rufescens)
MiRBase ID
Paralogues Hru-Mir-216-P1 
Orthologues Aae-Mir-216-P2  Aga-Mir-216-P2  Agr-Mir-216-P2d  Asu-Mir-216-P2  Ava-Mir-216-P2  Bfl-Mir-216-P2  Bge-Mir-216-P2  Bko-Mir-216-P2  Bla-Mir-216-P2  Bpl-Mir-216-P2  Cbr-Mir-216-P2  Cel-Mir-216-P2  Csc-Mir-216-P2  Cte-Mir-216-P2d  Dan-Mir-216-P2  Dlo-Mir-216-P2  Dma-Mir-216-P2  Dme-Mir-216-P2  Dmo-Mir-216-P2  Dpu-Mir-216-P2  Dsi-Mir-216-P2  Dya-Mir-216-P2  Esc-Mir-216-P2d  Hme-Mir-216-P2  Isc-Mir-216-P2  Lan-Mir-216-P2d1  Lan-Mir-216-P2d2  Lgi-Mir-216-P2d  Lhy-Mir-216-P2d  Llo-Mir-216-P2d  Mgi-Mir-216-P2d  Mom-Mir-216-P2d  Npo-Mir-216-P2d  Obi-Mir-216-P2d  Ofu-Mir-216-P2d  Ovu-Mir-216-P2d  Pau-Mir-216-P2d  Pca-Mir-216-P2  Pdu-Mir-216-P2d  Pve-Mir-216-P2d  Rph-Mir-216-P2d  Snu-Mir-216-P2d  Tca-Mir-216-P2  Tur-Mir-216-P2 
Node of Origin (locus) Lophotrochozoa
Node of Origin (family) Nephrozoa
Genome context
(GCA_023055435.1_xgHalRufe1.0.p_genomic_plus_traces)
JALGQA010000003.1: 15755123-15755181 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGAAAGGGCUUGCAUGUGUUGAUGUUUGUCUAAUCUCAGCUGGUAAUUCUGAGUAAAAAGGAGGCCUCAAGUUACUAGCCGAGAUUACAUAAAUAUCUUACCGAACAGCAUGGACUAAC
Get precursor sequence
Structure
        10        20          30        40        50         
UGAAAGGGCUUGCAUGUGUU--|        C       A          C    UAAAA 
                      GAUGUUUGU UAAUCUC GCUGGUAAUU UGAG     A
                      CUAUAAAUA AUUAGAG CGAUCAUUGA ACUC     G
CAAUCAGGUACGACAAGCCAUU^        C       C          -    CGGAG 
       110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To To
Mature sequence

Hru-Mir-216-P2d_5p

mirBase accessionNone
Sequence
0- UAAUCUCAGCUGGUAAUUCUGAG -23
Get sequence
Star sequence

Hru-Mir-216-P2d_3p*

mirBase accessionNone
Sequence
37- CAAGUUACUAGCCGAGAUUACA -59
Get sequence