MirGeneDB ID | Hru-Mir-216-P2d |
Family name |
MIR-216 (all species) |
Seed |
AAUCUCA |
Species |
Red Abalone (Haliotis rufescens) |
MiRBase ID |
|
Paralogues |
Hru-Mir-216-P1
|
Orthologues |
Aae-Mir-216-P2
Aga-Mir-216-P2
Agr-Mir-216-P2d
Asu-Mir-216-P2
Ava-Mir-216-P2
Bfl-Mir-216-P2
Bge-Mir-216-P2
Bko-Mir-216-P2
Bla-Mir-216-P2
Bpl-Mir-216-P2
Cbr-Mir-216-P2
Cel-Mir-216-P2
Csc-Mir-216-P2
Cte-Mir-216-P2d
Dan-Mir-216-P2
Dlo-Mir-216-P2
Dma-Mir-216-P2
Dme-Mir-216-P2
Dmo-Mir-216-P2
Dpu-Mir-216-P2
Dsi-Mir-216-P2
Dya-Mir-216-P2
Esc-Mir-216-P2d
Hme-Mir-216-P2
Isc-Mir-216-P2
Lan-Mir-216-P2d1
Lan-Mir-216-P2d2
Lgi-Mir-216-P2d
Lhy-Mir-216-P2d
Llo-Mir-216-P2d
Mgi-Mir-216-P2d
Mom-Mir-216-P2d
Npo-Mir-216-P2d
Obi-Mir-216-P2d
Ofu-Mir-216-P2d
Ovu-Mir-216-P2d
Pau-Mir-216-P2d
Pca-Mir-216-P2
Pdu-Mir-216-P2d
Pve-Mir-216-P2d
Rph-Mir-216-P2d
Snu-Mir-216-P2d
Tca-Mir-216-P2
Tur-Mir-216-P2
|
Node of Origin (locus) |
Lophotrochozoa
|
Node of Origin (family) |
Nephrozoa
|
Genome context (GCA_023055435.1_xgHalRufe1.0.p_genomic_plus_traces) |
JALGQA010000003.1: 15755123-15755181 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGAAAGGGCUUGCAUGUGUUGAUGUUUGUCUAAUCUCAGCUGGUAAUUCUGAGUAAAAAGGAGGCCUCAAGUUACUAGCCGAGAUUACAUAAAUAUCUUACCGAACAGCAUGGACUAAC
Get precursor sequence
|
Structure | 10 20 30 40 50
UGAAAGGGCUUGCAUGUGUU--| C A C UAAAA
GAUGUUUGU UAAUCUC GCUGGUAAUU UGAG A
CUAUAAAUA AUUAGAG CGAUCAUUGA ACUC G
CAAUCAGGUACGACAAGCCAUU^ C C - CGGAG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Hru-Mir-216-P2d_5p |
mirBase accession | None |
Sequence |
0- UAAUCUCAGCUGGUAAUUCUGAG -23
Get sequence
|
Star sequence |
Hru-Mir-216-P2d_3p* |
mirBase accession | None |
Sequence |
37- CAAGUUACUAGCCGAGAUUACA -59
Get sequence
|