MirGeneDB 3.0

MirGeneDB ID

Lan-Mir-216-P2d1

Family name MIR-216 (all species)
Seed AAUCUCA
Species Lingula (Lingula anatina)
MiRBase ID
Paralogues Lan-Mir-216-P1e  Lan-Mir-216-P1f  Lan-Mir-216-P2d2 
Orthologues Aae-Mir-216-P2  Aga-Mir-216-P2  Agr-Mir-216-P2d  Asu-Mir-216-P2  Ava-Mir-216-P2  Bfl-Mir-216-P2  Bge-Mir-216-P2  Bko-Mir-216-P2  Bla-Mir-216-P2  Bpl-Mir-216-P2  Cbr-Mir-216-P2  Cel-Mir-216-P2  Csc-Mir-216-P2  Cte-Mir-216-P2d  Dan-Mir-216-P2  Dlo-Mir-216-P2  Dma-Mir-216-P2  Dme-Mir-216-P2  Dmo-Mir-216-P2  Dpu-Mir-216-P2  Dsi-Mir-216-P2  Dya-Mir-216-P2  Esc-Mir-216-P2d  Hme-Mir-216-P2  Hru-Mir-216-P2d  Isc-Mir-216-P2  Lgi-Mir-216-P2d  Lhy-Mir-216-P2d  Llo-Mir-216-P2d  Mgi-Mir-216-P2d  Mom-Mir-216-P2d  Npo-Mir-216-P2d  Obi-Mir-216-P2d  Ofu-Mir-216-P2d  Ovu-Mir-216-P2d  Pau-Mir-216-P2d  Pca-Mir-216-P2  Pdu-Mir-216-P2d  Pve-Mir-216-P2d  Rph-Mir-216-P2d  Snu-Mir-216-P2d  Tca-Mir-216-P2  Tur-Mir-216-P2 
Node of Origin (locus) L. anatina
Node of Origin (family) Nephrozoa
Genome context
(LinAna_1.0)
LFEI01001594: 15818-15879 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UCCUUGGCUAACAUCAUGUAAAUGUAGCAUUAAUCUCAGCUGGUAAUUAUGAGUAUUUAUCCAAAAGCCUCAAGUUACCAGGUGAGAUUUAAGCUAUGUUCUACUAACCAACUUACUGUACA
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Structure
        10         20         30        40        50        60 
UCCUUGGCUAACAUCAU-   -|       AUU       G         A    UAUUUAU 
                  GUA AAUGUAGC   AAUCUCA CUGGUAAUU UGAG       \
                  CAU UUGUAUCG   UUAGAGU GACCAUUGA ACUC       C
ACAUGUCAUUCAACCAAU   C^       AAU       G         -    CGAAAAC 
120       110       100        90        80         70
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
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Mature sequence

Lan-Mir-216-P2d1_5p

mirBase accessionNone
Sequence
0- UAAUCUCAGCUGGUAAUUAUGAG -23
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Star sequence

Lan-Mir-216-P2d1_3p* (predicted)

mirBase accessionNone
Sequence
40- CAAGUUACCAGGUGAGAUUUAA -62
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