Mir-216-P2d

MirGeneDB ID

Obi-Mir-216-P2d

Family name

MIR-216 (all species)

Seed

AAUCUCA

Species

California two-spot octopus (Octopus bimaculoides)

MiRBase ID

Paralogues

Obi-Mir-216-P2c

Orthologues

Aae-Mir-216-P2 Aga-Mir-216-P2 Agr-Mir-216-P2d Asu-Mir-216-P2 Ava-Mir-216-P2 Bfl-Mir-216-P2 Bge-Mir-216-P2 Bko-Mir-216-P2 Bla-Mir-216-P2 Bpl-Mir-216-P2 Cbr-Mir-216-P2 Cel-Mir-216-P2 Csc-Mir-216-P2 Cte-Mir-216-P2d Dan-Mir-216-P2 Dlo-Mir-216-P2 Dma-Mir-216-P2 Dme-Mir-216-P2 Dmo-Mir-216-P2 Dpu-Mir-216-P2 Dsi-Mir-216-P2 Dya-Mir-216-P2 Esc-Mir-216-P2d Hme-Mir-216-P2 Hru-Mir-216-P2d Isc-Mir-216-P2 Lan-Mir-216-P2d1 Lan-Mir-216-P2d2 Lgi-Mir-216-P2d Lhy-Mir-216-P2d Llo-Mir-216-P2d Mgi-Mir-216-P2d Mom-Mir-216-P2d Npo-Mir-216-P2d Ofu-Mir-216-P2d Ovu-Mir-216-P2d Pau-Mir-216-P2d Pca-Mir-216-P2 Pdu-Mir-216-P2d Pve-Mir-216-P2d Rph-Mir-216-P2d Snu-Mir-216-P2d Tca-Mir-216-P2 Tur-Mir-216-P2

Node of Origin (locus)

Lophotrochozoa

Node of Origin (family)

Nephrozoa

Genome context
(PRJNA270931_OBI)

KQ415847: 304811-304870 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

NNNNNNNNNNNNNNNNUUUUGAUCUUUGUGUAAUCUCAGUUAGUAAUUCCGAGUGGAUAAGAUAGCCUCAAGUUACUAGCCGAGAUUACAUGAAUGUCUCAGCUAACAGCAUGAAUCCAC

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Structure

        10        20          30        40        50          
NNNNNNNNNNNNNNNNUUUU--|  C  UG         A          CC   UGGAUA 
                      GAU UU  UGUAAUCUC GUUAGUAAUU  GAG      \
                      CUG AA  ACAUUAGAG CGAUCAUUGA  CUC      A
CACCUAAGUACGACAAUCGACU^  U  GU         C          A-   CGAUAG 
.       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Obi-Mir-216-P2d_5p

mirBase accession

None

Sequence

0- UAAUCUCAGUUAGUAAUUCCGAG -23

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Co-mature sequence

Obi-Mir-216-P2d_3p

mirBase accession

None

Sequence

38- CAAGUUACUAGCCGAGAUUACA -60

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