Mir-216-P2d

MirGeneDB ID

Rph-Mir-216-P2d

Family name

MIR-216 (all species)

Seed

AAUCUCA

Species

Japanese carpet shell (Ruditapes philippinarum)

MiRBase ID

Paralogues

Rph-Mir-216-P1

Orthologues

Aae-Mir-216-P2 Aga-Mir-216-P2 Agr-Mir-216-P2d Asu-Mir-216-P2 Ava-Mir-216-P2 Bfl-Mir-216-P2 Bge-Mir-216-P2 Bko-Mir-216-P2 Bla-Mir-216-P2 Bpl-Mir-216-P2 Cbr-Mir-216-P2 Cel-Mir-216-P2 Csc-Mir-216-P2 Cte-Mir-216-P2d Dan-Mir-216-P2 Dlo-Mir-216-P2 Dma-Mir-216-P2 Dme-Mir-216-P2 Dmo-Mir-216-P2 Dpu-Mir-216-P2 Dsi-Mir-216-P2 Dya-Mir-216-P2 Esc-Mir-216-P2d Hme-Mir-216-P2 Hru-Mir-216-P2d Isc-Mir-216-P2 Lan-Mir-216-P2d1 Lan-Mir-216-P2d2 Lgi-Mir-216-P2d Lhy-Mir-216-P2d Llo-Mir-216-P2d Mgi-Mir-216-P2d Mom-Mir-216-P2d Npo-Mir-216-P2d Obi-Mir-216-P2d Ofu-Mir-216-P2d Ovu-Mir-216-P2d Pau-Mir-216-P2d Pca-Mir-216-P2 Pdu-Mir-216-P2d Pve-Mir-216-P2d Snu-Mir-216-P2d Tca-Mir-216-P2 Tur-Mir-216-P2

Node of Origin (locus)

Lophotrochozoa

Node of Origin (family)

Bilateria

Genome context
(Ruditapes_GCA_009026015)

CM018538.1: 42665214-42665275 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

AACUCGUGCAUGAGAUGGUUACUGUUUGUUUAAUCUCAGCUGGUAAUUCUGAGUAGACGAUUAAAGACCUCAAGUUACCAGCGGAGAUCAUACAAAUAUAACUACUAACAUCUAACAUCGGC

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Structure

        10           20        30        40        50        60 
AACUCGUGCAUGAGAUG---|   C       UUA     A          C    UAGACGA 
                    GUUA UGUUUGU   AUCUC GCUGGUAAUU UGAG       \
                    CAAU AUAAACA   UAGAG CGACCAUUGA ACUC       U
CGGCUACAAUCUACAAUCAU^   -       UAC     G          -    CAGAAAU 
120       110       100         90        80         70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr

Mature sequence

Rph-Mir-216-P2d_5p

mirBase accession

None

Sequence

0- UAAUCUCAGCUGGUAAUUCUGAG -23

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Star sequence

Rph-Mir-216-P2d_3p*

mirBase accession

None

Sequence

40- CAAGUUACCAGCGGAGAUCAUA -62

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