MirGeneDB 3.0
MirGeneDB ID

Rph-Mir-216-P2d

Family name MIR-216 (all species)
Seed AAUCUCA
Species Japanese carpet shell (Ruditapes philippinarum)
MiRBase ID
Paralogues Rph-Mir-216-P1 
Orthologues Aae-Mir-216-P2  Aga-Mir-216-P2  Agr-Mir-216-P2d  Asu-Mir-216-P2  Ava-Mir-216-P2  Bfl-Mir-216-P2  Bge-Mir-216-P2  Bko-Mir-216-P2  Bla-Mir-216-P2  Bpl-Mir-216-P2  Cbr-Mir-216-P2  Cel-Mir-216-P2  Csc-Mir-216-P2  Cte-Mir-216-P2d  Dan-Mir-216-P2  Dlo-Mir-216-P2  Dma-Mir-216-P2  Dme-Mir-216-P2  Dmo-Mir-216-P2  Dpu-Mir-216-P2  Dsi-Mir-216-P2  Dya-Mir-216-P2  Esc-Mir-216-P2d  Hme-Mir-216-P2  Hru-Mir-216-P2d  Isc-Mir-216-P2  Lan-Mir-216-P2d1  Lan-Mir-216-P2d2  Lgi-Mir-216-P2d  Lhy-Mir-216-P2d  Llo-Mir-216-P2d  Mgi-Mir-216-P2d  Mom-Mir-216-P2d  Npo-Mir-216-P2d  Obi-Mir-216-P2d  Ofu-Mir-216-P2d  Ovu-Mir-216-P2d  Pau-Mir-216-P2d  Pca-Mir-216-P2  Pdu-Mir-216-P2d  Pve-Mir-216-P2d  Snu-Mir-216-P2d  Tca-Mir-216-P2  Tur-Mir-216-P2 
Node of Origin (locus) Lophotrochozoa
Node of Origin (family) Nephrozoa
Genome context
(Ruditapes_GCA_009026015)		 CM018538.1: 42665214-42665275 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AACUCGUGCAUGAGAUGGUUACUGUUUGUUUAAUCUCAGCUGGUAAUUCUGAGUAGACGAUUAAAGACCUCAAGUUACCAGCGGAGAUCAUACAAAUAUAACUACUAACAUCUAACAUCGGC
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Structure
        10           20        30        40        50        60 
AACUCGUGCAUGAGAUG---|   C       UUA     A          C    UAGACGA 
                    GUUA UGUUUGU   AUCUC GCUGGUAAUU UGAG       \
                    CAAU AUAAACA   UAGAG CGACCAUUGA ACUC       U
CGGCUACAAUCUACAAUCAU^   -       UAC     G          -    CAGAAAU 
120       110       100         90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru
Mature sequence

Rph-Mir-216-P2d_5p
mirBase accessionNone
Sequence 
0- UAAUCUCAGCUGGUAAUUCUGAG -23
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Star sequence

Rph-Mir-216-P2d_3p*
mirBase accessionNone
Sequence 
40- CAAGUUACCAGCGGAGAUCAUA -62
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