MirGeneDB 3.0
MirGeneDB ID

Pdu-Mir-216-P2d

Family name MIR-216 (all species)
Seed AAUCUCA
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues Pdu-Mir-216-P1 
Orthologues Aae-Mir-216-P2  Aga-Mir-216-P2  Agr-Mir-216-P2d  Asu-Mir-216-P2  Ava-Mir-216-P2  Bfl-Mir-216-P2  Bge-Mir-216-P2  Bko-Mir-216-P2  Bla-Mir-216-P2  Bpl-Mir-216-P2  Cbr-Mir-216-P2  Cel-Mir-216-P2  Csc-Mir-216-P2  Cte-Mir-216-P2d  Dan-Mir-216-P2  Dlo-Mir-216-P2  Dma-Mir-216-P2  Dme-Mir-216-P2  Dmo-Mir-216-P2  Dpu-Mir-216-P2  Dsi-Mir-216-P2  Dya-Mir-216-P2  Esc-Mir-216-P2d  Hme-Mir-216-P2  Hru-Mir-216-P2d  Isc-Mir-216-P2  Lan-Mir-216-P2d1  Lan-Mir-216-P2d2  Lgi-Mir-216-P2d  Lhy-Mir-216-P2d  Llo-Mir-216-P2d  Mgi-Mir-216-P2d  Mom-Mir-216-P2d  Npo-Mir-216-P2d  Obi-Mir-216-P2d  Ofu-Mir-216-P2d  Ovu-Mir-216-P2d  Pau-Mir-216-P2d  Pca-Mir-216-P2  Pve-Mir-216-P2d  Rph-Mir-216-P2d  Snu-Mir-216-P2d  Tca-Mir-216-P2  Tur-Mir-216-P2 
Node of Origin (locus) Lophotrochozoa
Node of Origin (family) Nephrozoa
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)		 JAPTHN010000007.1: 46914987-46915043 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CGCAUGGCUUGCUUGCUUGUGACGUUGAUCUAAUCUCAGCUGGUAAAAGUGAGUGCAUGACUUCUCCAGUUACUAGCUGAGGUUACAUGAAUGUCCAGAAUUCACAACAUGGUCUCA
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Structure
        10           20        30        40        50        
CGCAUGGCUUGCUUGCU---| U      G  C                AAGU   UGCA 
                    UG GACGUU AU UAAUCUCAGCUGGUAA    GAG    U
                    AC CUGUAA UA AUUGGAGUCGAUCAUU    CUC    G
ACUCUGGUACAACACUUAAG^ -      G  C                GAC-   UUCA 
     110       100         90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Mature sequence

Pdu-Mir-216-P2d_5p
mirBase accessionNone
Sequence 
0- UAAUCUCAGCUGGUAAAAGUGAG -23
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Star sequence

Pdu-Mir-216-P2d_3p*
mirBase accessionNone
Sequence 
35- CCAGUUACUAGCUGAGGUUACA -57
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