MirGeneDB ID | Mgi-Mir-216-P2d |
Family name |
MIR-216 (all species) |
Seed |
AAUCUCA |
Species |
Pacific oyster (Magallana gigas) |
MiRBase ID |
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Paralogues |
Mgi-Mir-216-P1
|
Orthologues |
Aae-Mir-216-P2
Aga-Mir-216-P2
Agr-Mir-216-P2d
Asu-Mir-216-P2
Ava-Mir-216-P2
Bfl-Mir-216-P2
Bge-Mir-216-P2
Bko-Mir-216-P2
Bla-Mir-216-P2
Bpl-Mir-216-P2
Cbr-Mir-216-P2
Cel-Mir-216-P2
Csc-Mir-216-P2
Cte-Mir-216-P2d
Dan-Mir-216-P2
Dlo-Mir-216-P2
Dma-Mir-216-P2
Dme-Mir-216-P2
Dmo-Mir-216-P2
Dpu-Mir-216-P2
Dsi-Mir-216-P2
Dya-Mir-216-P2
Esc-Mir-216-P2d
Hme-Mir-216-P2
Hru-Mir-216-P2d
Isc-Mir-216-P2
Lan-Mir-216-P2d1
Lan-Mir-216-P2d2
Lgi-Mir-216-P2d
Lhy-Mir-216-P2d
Llo-Mir-216-P2d
Mom-Mir-216-P2d
Npo-Mir-216-P2d
Obi-Mir-216-P2d
Ofu-Mir-216-P2d
Ovu-Mir-216-P2d
Pau-Mir-216-P2d
Pca-Mir-216-P2
Pdu-Mir-216-P2d
Pve-Mir-216-P2d
Rph-Mir-216-P2d
Snu-Mir-216-P2d
Tca-Mir-216-P2
Tur-Mir-216-P2
|
Node of Origin (locus) |
Lophotrochozoa
|
Node of Origin (family) |
Nephrozoa
|
Genome context (CGI_GCA_000297895.1) |
scaffold1785: 68810-68867 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUCUCUUGCCUGAUCCUGAUGAUGUUUGCCUAAUCUCAGCUGGUAAUUCUGAGUUGAGCAAGACCUCAAGUUACUAGCCGAGAUUACACAAGUGUCUCCAGUGCCUUCACACUAACCC
Get precursor sequence
|
Structure | 10 20 30 40 50
UUCUCUUGCCUGAUCCU---| U UG CC A C UUGAG
GA GA UUUG UAAUCUC GCUGGUAAUU UGAG \
CU CU GAAC AUUAGAG CGAUCAUUGA ACUC C
CCCAAUCACACUUCCGUGAC^ - GU AC C - CAGAA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
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A- |
D- |
D- |
F- |
L- |
Ea |
Eg |
Fe |
Gi |
Ha |
He |
Ju |
La |
Ma |
Ma |
Ma |
Pe |
Re |
Sp |
Um |
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Mature sequence |
Mgi-Mir-216-P2d_5p |
mirBase accession | None |
Sequence |
0- UAAUCUCAGCUGGUAAUUCUGAG -23
Get sequence
|
Star sequence |
Mgi-Mir-216-P2d_3p* |
mirBase accession | None |
Sequence |
36- CAAGUUACUAGCCGAGAUUACA -58
Get sequence
|