MirGeneDB 3.0

MirGeneDB ID

Ovu-Mir-216-P2d

Family name MIR-216 (all species)
Seed AAUCUCA
Species Common octopus (Octopus vulgaris)
MiRBase ID
Paralogues Ovu-Mir-216-P2c 
Orthologues Aae-Mir-216-P2  Aga-Mir-216-P2  Agr-Mir-216-P2d  Asu-Mir-216-P2  Ava-Mir-216-P2  Bfl-Mir-216-P2  Bge-Mir-216-P2  Bko-Mir-216-P2  Bla-Mir-216-P2  Bpl-Mir-216-P2  Cbr-Mir-216-P2  Cel-Mir-216-P2  Csc-Mir-216-P2  Cte-Mir-216-P2d  Dan-Mir-216-P2  Dlo-Mir-216-P2  Dma-Mir-216-P2  Dme-Mir-216-P2  Dmo-Mir-216-P2  Dpu-Mir-216-P2  Dsi-Mir-216-P2  Dya-Mir-216-P2  Esc-Mir-216-P2d  Hme-Mir-216-P2  Hru-Mir-216-P2d  Isc-Mir-216-P2  Lan-Mir-216-P2d1  Lan-Mir-216-P2d2  Lgi-Mir-216-P2d  Lhy-Mir-216-P2d  Llo-Mir-216-P2d  Mgi-Mir-216-P2d  Mom-Mir-216-P2d  Npo-Mir-216-P2d  Obi-Mir-216-P2d  Ofu-Mir-216-P2d  Pau-Mir-216-P2d  Pca-Mir-216-P2  Pdu-Mir-216-P2d  Pve-Mir-216-P2d  Rph-Mir-216-P2d  Snu-Mir-216-P2d  Tca-Mir-216-P2  Tur-Mir-216-P2 
Node of Origin (locus) Lophotrochozoa
Node of Origin (family) Nephrozoa
Genome context
(GCA_003957725.1_ASM395772v1_OVU)
RXHP01022029.1: 185931-185990 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GUGUUUAUAAUCCUUUUUUUGAUCUUUGUGUAAUCUCAGUUAGUAAUUCCGAGUGGAUAAGAUAGCCUCAAGUUACUAGCCGAGAUUACAUGAAUGUCUCAGCUAACAGCAUGAAUCCAC
Get precursor sequence
Structure
        10        20          30        40        50          
GUGUUUAUAAUCCUUUUUUU--|  C  UG         A          CC   UGGAUA 
                      GAU UU  UGUAAUCUC GUUAGUAAUU  GAG      \
                      CUG AA  ACAUUAGAG CGAUCAUUGA  CUC      A
CACCUAAGUACGACAAUCGACU^  U  GU         C          A-   CGAUAG 
.       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ax Ce Fr He In Op Op Pe Po Re Sk St Su Su Te Ve Vi Wh
Mature sequence

Ovu-Mir-216-P2d_5p

mirBase accessionNone
Sequence
0- UAAUCUCAGUUAGUAAUUCCGAG -23
Get sequence
Co-mature sequence

Ovu-Mir-216-P2d_3p

mirBase accessionNone
Sequence
38- CAAGUUACUAGCCGAGAUUACA -60
Get sequence