MirGeneDB ID | Ovu-Mir-216-P2d |
Family name |
MIR-216 (all species) |
Seed |
AAUCUCA |
Species |
Common octopus (Octopus vulgaris) |
MiRBase ID |
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Paralogues |
Ovu-Mir-216-P2c
|
Orthologues |
Aae-Mir-216-P2
Aga-Mir-216-P2
Agr-Mir-216-P2d
Asu-Mir-216-P2
Ava-Mir-216-P2
Bfl-Mir-216-P2
Bge-Mir-216-P2
Bko-Mir-216-P2
Bla-Mir-216-P2
Bpl-Mir-216-P2
Cbr-Mir-216-P2
Cel-Mir-216-P2
Csc-Mir-216-P2
Cte-Mir-216-P2d
Dan-Mir-216-P2
Dlo-Mir-216-P2
Dma-Mir-216-P2
Dme-Mir-216-P2
Dmo-Mir-216-P2
Dpu-Mir-216-P2
Dsi-Mir-216-P2
Dya-Mir-216-P2
Esc-Mir-216-P2d
Hme-Mir-216-P2
Hru-Mir-216-P2d
Isc-Mir-216-P2
Lan-Mir-216-P2d1
Lan-Mir-216-P2d2
Lgi-Mir-216-P2d
Lhy-Mir-216-P2d
Llo-Mir-216-P2d
Mgi-Mir-216-P2d
Mom-Mir-216-P2d
Npo-Mir-216-P2d
Obi-Mir-216-P2d
Ofu-Mir-216-P2d
Pau-Mir-216-P2d
Pca-Mir-216-P2
Pdu-Mir-216-P2d
Pve-Mir-216-P2d
Rph-Mir-216-P2d
Snu-Mir-216-P2d
Tca-Mir-216-P2
Tur-Mir-216-P2
|
Node of Origin (locus) |
Lophotrochozoa
|
Node of Origin (family) |
Nephrozoa
|
Genome context (GCA_003957725.1_ASM395772v1_OVU) |
RXHP01022029.1: 185931-185990 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GUGUUUAUAAUCCUUUUUUUGAUCUUUGUGUAAUCUCAGUUAGUAAUUCCGAGUGGAUAAGAUAGCCUCAAGUUACUAGCCGAGAUUACAUGAAUGUCUCAGCUAACAGCAUGAAUCCAC
Get precursor sequence
|
Structure | 10 20 30 40 50
GUGUUUAUAAUCCUUUUUUU--| C UG A CC UGGAUA
GAU UU UGUAAUCUC GUUAGUAAUU GAG \
CUG AA ACAUUAGAG CGAUCAUUGA CUC A
CACCUAAGUACGACAAUCGACU^ U GU C A- CGAUAG
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Ax |
Ce |
Fr |
He |
In |
Op |
Op |
Pe |
Po |
Re |
Sk |
St |
Su |
Su |
Te |
Ve |
Vi |
Wh |
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Mature sequence |
Ovu-Mir-216-P2d_5p |
mirBase accession | None |
Sequence |
0- UAAUCUCAGUUAGUAAUUCCGAG -23
Get sequence
|
Co-mature sequence |
Ovu-Mir-216-P2d_3p |
mirBase accession | None |
Sequence |
38- CAAGUUACUAGCCGAGAUUACA -60
Get sequence
|