MirGeneDB 3.0
103 Ruditapes philippinarum microRNA genes
Sort by genome coordinates Motifs Tissue expression
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MirGeneDB ID ▲ MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) 3' NTU  UG  UGUG CNNC Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru
Rph-Bantam-P21 None BANTAM GAGAUCA None None CM018540.1 15041974 15042034 - R. philippinarum Protostomia No 1
Rph-Bantam-P22 None BANTAM GAGAUCA None None CM018540.1 15041340 15041400 - R. philippinarum Protostomia No 1
Rph-Let-7 None LET-7 GAGGUAG None None CM018531.1 24991230 24991295 - Bilateria Bilateria No 1
Rph-Mir-1 None MIR-1 GGAAUGU None None CM018526.1 16504069 16504136 - Bilateria Bilateria No 1
Rph-Mir-2-o63 None MIR-2 AUCACAG None None CM018536.1 47738775 47738832 - R. philippinarum Protostomia No
Rph-Mir-2-o64 None MIR-2 AUCACAG None None CM018536.1 47738531 47738593 - R. philippinarum Protostomia No 1
Rph-Mir-2-o65 None MIR-2 AUCACAG None None CM018536.1 47738240 47738298 - R. philippinarum Protostomia No
Rph-Mir-2-o66 None MIR-2 AUCACAG None None CM018536.1 47737950 47738006 - R. philippinarum Protostomia No 1 1
Rph-Mir-2-o67 None MIR-2 AUCACAG None None QUSP01002410.1 64738 64796 - R. philippinarum Protostomia No 1 1
Rph-Mir-2-o68 None MIR-2 AUCACAG None None QUSP01002410.1 64540 64597 - R. philippinarum Protostomia No
Rph-Mir-2-o69 None MIR-2 AUCACAG None None QUSP01002410.1 63485 63542 - R. philippinarum Protostomia No
Rph-Mir-2-o70 None MIR-2 AUCACAG None None QUSP01002410.1 60291 60350 - R. philippinarum Protostomia No 1
Rph-Mir-2-o71 None MIR-2 AUCACAG None None QUSP01002410.1 60139 60197 - R. philippinarum Protostomia No 1
Rph-Mir-2-o72 None MIR-2 AUCACAG None None QUSP01001813.1 155017 155075 - R. philippinarum Protostomia No
Rph-Mir-2-o73 None MIR-2 AUCACAG None None QUSP01001813.1 154868 154926 - R. philippinarum Protostomia No 1
Rph-Mir-2-P12 None MIR-2 AUCACAG None None CM018536.1 47739104 47739161 - Lophotrochozoa Protostomia No 1
Rph-Mir-7 None MIR-7 GGAAGAC None None CM018526.1 31449765 31449825 + Bilateria Bilateria No 1 1
Rph-Mir-8 None MIR-8 AAUACUG None None CM018530.1 30403015 30403074 - Bilateria Nephrozoa No 1
Rph-Mir-9 None MIR-9 CUUUGGU None None CM018526.1 11142109 11142170 + Bilateria Bilateria No 1
Rph-Mir-10-P1 None MIR-10 ACCCUGU None None CM018531.1 24403455 24403513 + Bilateria Eumetazoa No
Rph-Mir-10-P2 None MIR-10 ACCCGUA None None CM018531.1 24992246 24992307 - Bilateria Eumetazoa No
Rph-Mir-10-P3 None MIR-10 CCCUGAG None None CM018531.1 24954546 24954609 - Bilateria Eumetazoa No 1
Rph-Mir-10-P5 None MIR-10 UACCCUG None None CM018531.1 24119047 24119105 + Lophotrochozoa Eumetazoa No
Rph-Mir-10-P6 None MIR-10 UCUCGUU None None CM018531.1 33041915 33041975 + Neotrochozoa Eumetazoa No 1
Rph-Mir-12 None MIR-12 GAGUAUU None None CM018538.1 42667417 42667474 + Protostomia Protostomia No 1
Rph-Mir-22-P1 None MIR-22 GCUGCCU None None CM018526.1 21804995 21805052 + Bilateria Bilateria No 1
Rph-Mir-22-P2 None MIR-22 AGCUGCC None None CM018526.1 21806394 21806455 + Bilateria Bilateria No 1
Rph-Mir-29-P1 None MIR-29 AGCACCA None None CM018527.1 5207953 5208020 + Bilateria Bilateria No
Rph-Mir-29-P2 None MIR-29 AGCACCA None None CM018527.1 5214533 5214591 + Bilateria Bilateria No 1 1
Rph-Mir-31 None MIR-31 GGCAAGA None None CM018524.1 42719725 42719786 - Bilateria Bilateria No 1
Rph-Mir-33-P15 None MIR-33 AAUGUUC None None CM018523.1 7580295 7580352 + R. philippinarum Bilateria No 1 1
Rph-Mir-33-P16 None MIR-33 AAUGUUC None None CM018523.1 7585243 7585300 + R. philippinarum Bilateria No 1 1
Rph-Mir-34 None MIR-34 GGCAGUG None None CM018531.1 6737344 6737402 - Bilateria Bilateria No 1
Rph-Mir-36 None MIR-36 CACCGGG None None CM018535.1 14872558 14872617 + Protostomia Protostomia Unknown
Rph-Mir-67-v1 None MIR-67 CACAACC None None CM018528.1 3998066 3998123 + Protostomia Protostomia No 1
Rph-Mir-67-v2 None MIR-67 ACAACCU None None CM018528.1 3998066 3998123 + Protostomia Protostomia No 1
Rph-Mir-71 None MIR-71 GAAAGAC None None CM018536.1 47739342 47739400 - Bilateria Nephrozoa No 1
Rph-Mir-76 None MIR-76 UCGUUGU None None CM018539.1 20224323 20224382 - Bilateria Nephrozoa No 1
Rph-Mir-87-o19 None MIR-87 UGAGCAA None None CM018532.1 24178980 24179040 - R. philippinarum Protostomia No 1
Rph-Mir-87-o20 None MIR-87 UGAGCAA None None CM018532.1 24178272 24178331 - R. philippinarum Protostomia No 1
Rph-Mir-87-o21 None MIR-87 UGAGCAA None None CM018532.1 24177000 24177060 - R. philippinarum Protostomia No 1
Rph-Mir-92-o51 None MIR-92 AUUGCAC None None CM018539.1 17459757 17459814 + R. philippinarum Bilateria No
Rph-Mir-92-o52 None MIR-92 AUUGCAC None None CM018539.1 17477113 17477170 + R. philippinarum Bilateria No 1 1
Rph-Mir-92-o53 None MIR-92 AUUGCAC None None CM018539.1 17477279 17477336 + R. philippinarum Bilateria No 1
Rph-Mir-92-o54 None MIR-92 AUUGCAC None None CM018539.1 17477769 17477831 + R. philippinarum Bilateria No
Rph-Mir-92-o55 None MIR-92 AUUGCAC None None CM018539.1 17478661 17478716 + R. philippinarum Bilateria No
Rph-Mir-96-P1h None MIR-96 UUGGCAC None None CM018532.1 37520691 37520749 - Mollusca Bilateria No 1
Rph-Mir-96-P1i None MIR-96 UUUGGCA None None CM018524.1 23401561 23401620 + Mollusca Bilateria No
Rph-Mir-96-P2 None MIR-96 UUGGCAC None None CM018527.1 7313180 7313240 - Bilateria Bilateria Unknown
Rph-Mir-96-P3 None MIR-96 AUGGCAC None None CM018527.1 7319270 7319328 - Bilateria Bilateria Unknown 1
Rph-Mir-124-P27 None MIR-124 AAGGCAC None None CM018524.1 22474341 22474398 - R. philippinarum Bilateria No 1
Rph-Mir-124-P28 None MIR-124 AAGGCAC None None CM018524.1 22473101 22473158 - R. philippinarum Bilateria No 1
Rph-Mir-133 None MIR-133 UGGUCCC None None CM018526.1 16485503 16485563 - Bilateria Bilateria No 1
Rph-Mir-137 None MIR-137 UAUUGCU None None CM018529.1 6414679 6414734 + Bilateria Bilateria No 1
Rph-Mir-153 None MIR-153 UGCAUAG None None CM018532.1 10143081 10143138 - Bilateria Bilateria No 1 1
Rph-Mir-184 None MIR-184 GGACGGA None None CM018539.1 21939398 21939455 - Bilateria Nephrozoa No 1
Rph-Mir-190 None MIR-190 GAUAUGU None None CM018539.1 15813742 15813803 + Bilateria Bilateria No 1
Rph-Mir-193-P1 None MIR-193 ACUGGCC None None CM018528.1 31665224 31665280 - Bilateria Bilateria No 1
Rph-Mir-193-P2 None MIR-193 AAUGCCC None None CM018540.1 37387608 37387662 + Bilateria Bilateria No 1
Rph-Mir-216-P1 None MIR-216 AAUAUCA None None CM018538.1 42663442 42663499 + Bilateria Nephrozoa No 1 1
Rph-Mir-216-P2d None MIR-216 AAUCUCA None None CM018538.1 42665214 42665275 + Lophotrochozoa Nephrozoa No 1
Rph-Mir-219 None MIR-219 GAUUGUC None None QUSP01003057.1 48067 48123 - Bilateria Bilateria No
Rph-Mir-242 None MIR-242 UGCGUAG None None CM018527.1 22888371 22888428 - Bilateria Nephrozoa Unknown
Rph-Mir-252-P1 None MIR-252 UAAGUAG None None CM018525.1 43443779 43443838 - Bilateria Bilateria Unknown 1
Rph-Mir-277 None MIR-277 AAAUGCA None None CM018531.1 6739135 6739193 - Protostomia Protostomia No 1
Rph-Mir-278 None MIR-278 CGGUGGG None None QUSP01003331.1 12246 12301 - Bilateria Bilateria No 1
Rph-Mir-279 None MIR-279 GACUAGA None None CM018535.1 14862667 14862724 + Protostomia Protostomia No 1 1 1
Rph-Mir-281 None MIR-281 GUCAUGG None None QUSP01000934.1 316944 317000 + Bilateria Nephrozoa No 1
Rph-Mir-315 None MIR-315 UUUGAUU None None CM018527.1 7266497 7266556 + Bilateria Nephrozoa No
Rph-Mir-317 None MIR-317 GAACACA None None CM018531.1 6746836 6746893 - Protostomia Protostomia No 1
Rph-Mir-375-P17a None MIR-375 UUGUUCA None None CM018532.1 7264639 7264697 + R. philippinarum Nephrozoa No 1
Rph-Mir-375-P17b None MIR-375 UUGUUCA None None CM018532.1 7262678 7262736 + R. philippinarum Nephrozoa No 1
Rph-Mir-375-P17c None MIR-375 UUGUUCA None None CM018532.1 7261471 7261529 + R. philippinarum Nephrozoa No 1
Rph-Mir-375-P17d None MIR-375 UUGUUCA None None CM018532.1 7924759 7924817 - R. philippinarum Nephrozoa No 1
Rph-Mir-375-P18 None MIR-375 UUGUUCA None None CM018532.1 7922725 7922783 - R. philippinarum Nephrozoa No 1
Rph-Mir-375-P19a None MIR-375 UUGUUCA None None CM018532.1 7926030 7926089 - R. philippinarum Nephrozoa No 1
Rph-Mir-375-P19b None MIR-375 UUGUUCA None None CM018532.1 7260174 7260233 + R. philippinarum Nephrozoa No 1
Rph-Mir-750 None MIR-750 CAGAUCU None None CM018525.1 41611523 41611581 + Protostomia Protostomia No 1
Rph-Mir-1175 None MIR-1175 GAGAUUC None None CM018525.1 41615516 41615580 + Protostomia Protostomia No 1 1
Rph-Mir-1984-P1 None MIR-1984 GCCCUAU None None CM018530.1 35728759 35728815 - Gastropoda + Bivalvia + Scaphopoda Conchifera No 1
Rph-Mir-1984-P2 None MIR-1984 GCCAUUU None None CM018530.1 35717317 35717375 - Gastropoda + Bivalvia + Scaphopoda Conchifera No 1
Rph-Mir-1986 None MIR-1986 GGAUUUC None None CM018529.1 4837237 4837295 + Lophotrochozoa Lophotrochozoa No 1
Rph-Mir-1989 None MIR-1989 CAGCUGU None None QUSP01004575.1 5057 5116 + Platytrochozoa Platytrochozoa Unknown 1
Rph-Mir-1990-P2 None MIR-1990 GGGACUA None None CM018529.1 4832540 4832596 + Lophotrochozoa Lophotrochozoa No 1
Rph-Mir-1992 None MIR-1992 CAGCAGU None None CM018537.1 21686874 21686934 + Platytrochozoa Platytrochozoa No 1
Rph-Mir-1993 None MIR-1993 AUUAUGC None None CM018535.1 7170414 7170472 - Protostomia Protostomia No 1
Rph-Mir-1994-P1 None MIR-1994 GAGACAG None None CM018530.1 33665252 33665312 + Mollusca Lophotrochozoa No 1
Rph-Mir-1994-P2 None MIR-1994 GAGACAG None None CM018530.1 33665598 33665657 + Mollusca Lophotrochozoa No 1
Rph-Mir-2001 None MIR-2001 UUGUGAC None None CM018525.1 43444147 43444207 - Bilateria Bilateria No 1
Rph-Mir-2722 None MIR-2722 GGCGCCG None None CM018540.1 44280437 44280494 - Mollusca Mollusca No 1
Rph-Mir-12589 None MIR-12589 UUGUAGA None None CM018528.1 19123189 19123246 - Autobranchia Autobranchia No 1 1
Rph-Mir-12610-v1 None MIR-12610 AUAUCUG None None QUSP01001701.1 75446 75503 - Heteroconchia Heteroconchia No 1
Rph-Mir-12610-v2 None MIR-12610 CGCUGUU None None QUSP01001701.1 75446 75503 - Heteroconchia Heteroconchia No 1
Rph-Mir-12611 None MIR-12611 CGAUAAC None None CM018524.1 2561619 2561676 + Heteroconchia Heteroconchia No 1 1
Rph-Mir-12612 None MIR-12612 CUACCUG None None QUSP01001701.1 75448 75505 + Heteroconchia Heteroconchia No
Rph-Novel-1-P1a None RPH-NOVEL-1 AUAUCUG None None None None None None R. philippinarum R. philippinarum No
Rph-Novel-1-P1b None RPH-NOVEL-1 AUAUCUG None None None None None None R. philippinarum R. philippinarum No
Rph-Novel-2 None RPH-NOVEL-2 CGGGACA None None CM018529.1 4830419 4830479 + R. philippinarum R. philippinarum No 1
Rph-Novel-3 None RPH-NOVEL-3 GUGAUAG None None CM018531.1 20317456 20317513 - R. philippinarum R. philippinarum No 1
Rph-Novel-4 None RPH-NOVEL-4 AAUGCCC None None CM018536.1 3932879 3932939 - R. philippinarum R. philippinarum No 1
Rph-Novel-5 None RPH-NOVEL-5 UAGGCCA None None CM018529.1 36733602 36733658 - R. philippinarum R. philippinarum No 1
Rph-Novel-6 None RPH-NOVEL-6 GUUUCAU None None CM018526.1 52477957 52478015 - R. philippinarum R. philippinarum No 1
Rph-Novel-7 None RPH-NOVEL-7 UUGAACG None None CM018532.1 2388912 2388969 - R. philippinarum R. philippinarum No 1

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