MirGeneDB 3.0
MirGeneDB ID

Rph-Mir-2-o73

Family name MIR-2 (all species)
Seed AUCACAG
Species Japanese carpet shell (Ruditapes philippinarum)
MiRBase ID
Paralogues Rph-Mir-2-o63  Rph-Mir-2-o64  Rph-Mir-2-o65  Rph-Mir-2-o66  Rph-Mir-2-o67  Rph-Mir-2-o68  Rph-Mir-2-o69  Rph-Mir-2-o70  Rph-Mir-2-o71  Rph-Mir-2-o72  Rph-Mir-2-P12 
Orthologues Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) R. philippinarum
Node of Origin (family) Protostomia
Genome context
(Ruditapes_GCA_009026015)		 QUSP01001813.1: 154868-154926 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AGGAAUUGUUUUGGCUGAAUAAGUUUGUGCCACCAAACUAACUGUUGAUGCAUUGAUUCUUAUUUGUAUCACAGCUGGCUUGAGUGAGCAGAAUACAGCUAAGUUCAACUUGUCUUUAU
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Structure
        10        20          30          40        50        
AGGAAUUGUUUUGGCUGAAUAA-  -  G   -   -|  A   A    U      UUGAU 
                       GU UU UGC CAC CAA CUA CUGU GAUGCA     U
                       CA AA ACG GUG GUU GGU GACA CUAUGU     C
UAUUUCUGUUCAACUUGAAUCGA  U  G   A   A^  C   C    -      UUAUU 
       110       100        90        80         70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru
Star sequence

Rph-Mir-2-o73_5p*
mirBase accessionNone
Sequence 
0- CACCAAACUAACUGUUGAUGCA -22
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Mature sequence

Rph-Mir-2-o73_3p
mirBase accessionNone
Sequence 
36- UAUCACAGCUGGCUUGAGUGAGC -59
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