MirGeneDB 3.0

MirGeneDB ID

Rph-Mir-2-o67

Family name MIR-2 (all species)
Seed AUCACAG
Species Japanese carpet shell (Ruditapes philippinarum)
MiRBase ID
Paralogues Rph-Mir-2-o63  Rph-Mir-2-o64  Rph-Mir-2-o65  Rph-Mir-2-o66  Rph-Mir-2-o68  Rph-Mir-2-o69  Rph-Mir-2-o70  Rph-Mir-2-o71  Rph-Mir-2-o72  Rph-Mir-2-o73  Rph-Mir-2-P12 
Orthologues Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) R. philippinarum
Node of Origin (family) Protostomia
Genome context
(Ruditapes_GCA_009026015)
QUSP01002410.1: 64738-64796 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GUUUAGAAUGAAUUCUUGUUUGUGACGGUACUGUCAAAGUGGUUGUGAUAUGUGAUUAUUUAUUCAGAUCACAGCCUGCUUUGAUAUUCUCACCAUGAACAUUCCUUCAAUUUAUGCUU
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Structure
        10          20        30        40         50        
GUUUAGAAUGAAUUCUU--   UG  AC  UAC         -|        A  UGAUU 
                   GUU  UG  GG   UGUCAAAGU GGUUGUGAU UG     A
                   CAA  AC  CU   AUAGUUUCG CCGACACUA AC     U
UUCGUAUUUAACUUCCUUA   GU  CA  CUU         U^        G  UUAUU 
       110       100        90        80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru
Star sequence

Rph-Mir-2-o67_5p*

mirBase accessionNone
Sequence
0- CUGUCAAAGUGGUUGUGAUAUG -22
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Mature sequence

Rph-Mir-2-o67_3p

mirBase accessionNone
Sequence
36- GAUCACAGCCUGCUUUGAUAUUC -59
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