MirGeneDB 3.0

MirGeneDB ID

Ple-Mir-2

Family name

MIR-2 (all species)

Seed

Species

Thorny-headed worm 2 (Pomphorhynchus laevis)

MiRBase ID

Paralogues

Orthologues

Aae-Mir-2-P1-v1 Aae-Mir-2-P1-v2 Aae-Mir-2-P2b Aae-Mir-2-P3 Aae-Mir-2-P4-v1 Aae-Mir-2-P4-v2 Aae-Mir-2-P5a Aae-Mir-2-P5b Aae-Mir-2-P7 Aae-Mir-2-P8 Aga-Mir-2-P1-v1 Aga-Mir-2-P1-v2 Aga-Mir-2-P2a Aga-Mir-2-P2b Aga-Mir-2-P3 Aga-Mir-2-P4-v1 Aga-Mir-2-P4-v2 Aga-Mir-2-P5a1 Aga-Mir-2-P5a2 Aga-Mir-2-P5b Aga-Mir-2-P7 Aga-Mir-2-P8 Agr-Mir-2-P12a Agr-Mir-2-P12b Agr-Mir-2-P12c Agr-Mir-2-P12d Agr-Mir-2-P12e Agr-Mir-2-P12f1 Agr-Mir-2-P12f2 Agr-Mir-2-o85 Agr-Mir-2-o86a-v1 Agr-Mir-2-o86a-v2 Agr-Mir-2-o86b Agr-Mir-2-o87-v1 Agr-Mir-2-o87-v2 Asu-Mir-2-o6 Asu-Mir-2-o7a Asu-Mir-2-o7b Asu-Mir-2-o8 Asu-Mir-2-o9 Asu-Mir-2-o10 Asu-Mir-2-o11a Asu-Mir-2-o11b Asu-Mir-2-o11c Asu-Mir-2-o11d Asu-Mir-2-P11 Ava-Mir-2-o139a Ava-Mir-2-o139b-v1 Ava-Mir-2-o139b-v2 Ava-Mir-2-o140a Ava-Mir-2-o140b Ava-Mir-2-o141a Ava-Mir-2-o141b Bge-Mir-2-P1-v1 Bge-Mir-2-P1-v2 Bge-Mir-2-P2a Bge-Mir-2-P2b Bge-Mir-2-P3-v1 Bge-Mir-2-P3-v2 Bge-Mir-2-P4-v1 Bge-Mir-2-P4-v2 Bge-Mir-2-P7 Cbr-Mir-2-o3 Cbr-Mir-2-o4 Cbr-Mir-2-P11 Cel-Mir-2-o3 Cel-Mir-2-o4 Cel-Mir-2-o5 Cel-Mir-2-P11 Csc-Mir-2-P1n Csc-Mir-2-P1o Csc-Mir-2-P2n Csc-Mir-2-P2o Csc-Mir-2-P3n Csc-Mir-2-P3o Csc-Mir-2-P4n Csc-Mir-2-P4o Cte-Mir-2-o13 Cte-Mir-2-o14 Cte-Mir-2-o15 Cte-Mir-2-o16 Cte-Mir-2-o17 Cte-Mir-2-o18 Cte-Mir-2-o19 Cte-Mir-2-P12 Dan-Mir-2-P1-v1 Dan-Mir-2-P1-v2 Dan-Mir-2-P2a Dan-Mir-2-P2b1 Dan-Mir-2-P2b2 Dan-Mir-2-P3a-v1 Dan-Mir-2-P3a-v2 Dan-Mir-2-P3b Dan-Mir-2-P4a-v1 Dan-Mir-2-P4a-v2 Dan-Mir-2-P4b-v1 Dan-Mir-2-P4b-v2 Dan-Mir-2-P5 Dan-Mir-2-P6a Dan-Mir-2-P6b Dan-Mir-2-P6c Dan-Mir-2-P7 Dan-Mir-2-P8 Dan-Mir-2-P9 Dgr-Mir-2-o36 Dgr-Mir-2-o37 Dgr-Mir-2-o38 Dgr-Mir-2-o39 Dgr-Mir-2-P12 Dlo-Mir-2-P1-v1 Dlo-Mir-2-P1-v2 Dlo-Mir-2-P2a Dlo-Mir-2-P2b Dlo-Mir-2-P3-v1 Dlo-Mir-2-P3-v2 Dlo-Mir-2-P5 Dlo-Mir-2-P7 Dma-Mir-2-o2 Dma-Mir-2-P1 Dma-Mir-2-P2 Dma-Mir-2-P3 Dma-Mir-2-P4 Dma-Mir-2-P5 Dme-Mir-2-P1-v1 Dme-Mir-2-P1-v2 Dme-Mir-2-P2a Dme-Mir-2-P2b1 Dme-Mir-2-P2b2 Dme-Mir-2-P3a Dme-Mir-2-P3b Dme-Mir-2-P4a-v1 Dme-Mir-2-P4a-v2 Dme-Mir-2-P4b-v1 Dme-Mir-2-P4b-v2 Dme-Mir-2-P5 Dme-Mir-2-P6a Dme-Mir-2-P6b Dme-Mir-2-P6c Dme-Mir-2-P7 Dme-Mir-2-P8-v1 Dme-Mir-2-P8-v2 Dme-Mir-2-P9-v1 Dme-Mir-2-P9-v2 Dmo-Mir-2-P1 Dmo-Mir-2-P2a Dmo-Mir-2-P2b1 Dmo-Mir-2-P2b2 Dmo-Mir-2-P3b Dmo-Mir-2-P4a-v1 Dmo-Mir-2-P4a-v2 Dmo-Mir-2-P4b-v1 Dmo-Mir-2-P4b-v2 Dmo-Mir-2-P5 Dmo-Mir-2-P6a Dmo-Mir-2-P6b Dmo-Mir-2-P6c Dmo-Mir-2-P7 Dmo-Mir-2-P8 Dmo-Mir-2-P9 Dpu-Mir-2-o2 Dpu-Mir-2-P1 Dpu-Mir-2-P2 Dpu-Mir-2-P3 Dpu-Mir-2-P4 Dpu-Mir-2-P5 Dsi-Mir-2-P1-v1 Dsi-Mir-2-P1-v2 Dsi-Mir-2-P2a Dsi-Mir-2-P2b1 Dsi-Mir-2-P2b2 Dsi-Mir-2-P3a Dsi-Mir-2-P3b Dsi-Mir-2-P4a-v1 Dsi-Mir-2-P4a-v2 Dsi-Mir-2-P4b-v1 Dsi-Mir-2-P4b-v2 Dsi-Mir-2-P5 Dsi-Mir-2-P6a Dsi-Mir-2-P6b Dsi-Mir-2-P6c Dsi-Mir-2-P7 Dsi-Mir-2-P8 Dsi-Mir-2-P9-v1 Dsi-Mir-2-P9-v2 Dya-Mir-2-P1-v1 Dya-Mir-2-P1-v2 Dya-Mir-2-P2a Dya-Mir-2-P2b1 Dya-Mir-2-P2b2 Dya-Mir-2-P3a Dya-Mir-2-P3b Dya-Mir-2-P4a-v1 Dya-Mir-2-P4a-v2 Dya-Mir-2-P4b-v1 Dya-Mir-2-P4b-v2 Dya-Mir-2-P5 Dya-Mir-2-P6a Dya-Mir-2-P6b Dya-Mir-2-P6c Dya-Mir-2-P7 Dya-Mir-2-P8 Dya-Mir-2-P9-v1 Dya-Mir-2-P9-v2 Eba-Mir-2-o90 Eba-Mir-2-o91 Eba-Mir-2-o92 Efe-Mir-2-o20 Efe-Mir-2-o21 Efe-Mir-2-o22 Efe-Mir-2-o23 Efe-Mir-2-o24 Efe-Mir-2-P12f Efe-Mir-2-P12g Egr-Mir-2-o136 Egr-Mir-2-o137 Egr-Mir-2-o138 Esc-Mir-2-o45-v1 Esc-Mir-2-o45-v2 Esc-Mir-2-o47a-v1 Esc-Mir-2-o47a-v2 Esc-Mir-2-o47b Esc-Mir-2-o47c Esc-Mir-2-o47d Esc-Mir-2-o48-v1 Esc-Mir-2-o48-v2 Esc-Mir-2-o49 Esc-Mir-2-P12 Gpa-Mir-2-P1-v1 Gpa-Mir-2-P1-v2 Gpa-Mir-2-P2a Gpa-Mir-2-P2b Gpa-Mir-2-P3a Gpa-Mir-2-P3b Gpa-Mir-2-P4a-v1 Gpa-Mir-2-P4a-v2 Gpa-Mir-2-P4b-v1 Gpa-Mir-2-P4b-v2 Gpa-Mir-2-P5-v1 Gpa-Mir-2-P5-v2 Gpa-Mir-2-P6 Gpa-Mir-2-P7 Gpa-Mir-2-P8 Gpa-Mir-2-P9 Gsa-Mir-2-o161a Gsa-Mir-2-o161b Gsa-Mir-2-o162 Gsa-Mir-2-o163 Gsp-Mir-2 Hme-Mir-2-P1-v1 Hme-Mir-2-P1-v2 Hme-Mir-2-P2a Hme-Mir-2-P2b Hme-Mir-2-P3-v1 Hme-Mir-2-P3-v2 Hme-Mir-2-P4 Hme-Mir-2-P7 Hme-Mir-2-P8 Hru-Mir-2-o51 Hru-Mir-2-o52 Hru-Mir-2-o53 Hru-Mir-2-o54 Hru-Mir-2-o55 Hru-Mir-2-P12 Isc-Mir-2-P1 Isc-Mir-2-P3 Isc-Mir-2-P4 Lan-Mir-2-o100 Lan-Mir-2-o101a Lan-Mir-2-o101b Lan-Mir-2-o102 Lan-Mir-2-o103 Lan-Mir-2-o104 Lan-Mir-2-o105 Lan-Mir-2-o106a Lan-Mir-2-o106b Lan-Mir-2-o107 Lan-Mir-2-o108 Lgi-Mir-2-o50 Lgi-Mir-2-P12a Lgi-Mir-2-P12b Lgi-Mir-2-P12c Lgi-Mir-2-P12d Lgi-Mir-2-P12e Lhy-Mir-2-P12 Lhy-Mir-2-o80 Lhy-Mir-2-o81 Lhy-Mir-2-o82 Lhy-Mir-2-o83 Lhy-Mir-2-o84 Llo-Mir-2-P12 Llo-Mir-2-o114-v1 Llo-Mir-2-o114-v2 Llo-Mir-2-o115 Llo-Mir-2-o116 Llo-Mir-2-o117 Llo-Mir-2-o118 Llo-Mir-2-o119 Llo-Mir-2-o120 Llo-Mir-2-o121 Lpo-Mir-2-P1g Lpo-Mir-2-P1h Lpo-Mir-2-P1i Lpo-Mir-2-P1j Lpo-Mir-2-P1k Lpo-Mir-2-P1l Lpo-Mir-2-P1m Lpo-Mir-2-P2g Lpo-Mir-2-P2h Lpo-Mir-2-P2j Lpo-Mir-2-P2l Lpo-Mir-2-P2m Lpo-Mir-2-P3g Lpo-Mir-2-P3h Lpo-Mir-2-P3i Lpo-Mir-2-P3k Lpo-Mir-2-P3l Lpo-Mir-2-P3m Lpo-Mir-2-P4h Lpo-Mir-2-P4i Lpo-Mir-2-P4j Lpo-Mir-2-P4k Lpo-Mir-2-P4l Mgi-Mir-2-o56 Mgi-Mir-2-o57 Mgi-Mir-2-o58a Mgi-Mir-2-o58b Mgi-Mir-2-o59 Mgi-Mir-2-o60 Mgi-Mir-2-o61 Mgi-Mir-2-o62 Mgi-Mir-2-P12 Mom-Mir-2-P12f Mom-Mir-2-P12g Mom-Mir-2-P12h Mom-Mir-2-P12i Mom-Mir-2-P12j Mom-Mir-2-P12k Mom-Mir-2-o85-v1 Mom-Mir-2-o85-v2 Mom-Mir-2-o86 Mom-Mir-2-o88 Mom-Mir-2-o89 Npo-Mir-2-o45 Npo-Mir-2-o47 Npo-Mir-2-o48a Npo-Mir-2-o48b Npo-Mir-2-o49 Npo-Mir-2-P12 Obi-Mir-2-o45-v1 Obi-Mir-2-o45-v2 Obi-Mir-2-o46-v1 Obi-Mir-2-o46-v2 Obi-Mir-2-o47a Obi-Mir-2-o47b Obi-Mir-2-o47c Obi-Mir-2-o47d Obi-Mir-2-o48-v1 Obi-Mir-2-o48-v2 Obi-Mir-2-o49 Obi-Mir-2-P12 Ofu-Mir-2-P12 Ofu-Mir-2-o153 Ofu-Mir-2-o154 Ofu-Mir-2-o155 Ofu-Mir-2-o156 Ofu-Mir-2-o157 Ofu-Mir-2-o158 Ovu-Mir-2-o45-v1 Ovu-Mir-2-o45-v2 Ovu-Mir-2-o46-v1 Ovu-Mir-2-o46-v2 Ovu-Mir-2-o47a Ovu-Mir-2-o47b Ovu-Mir-2-o47c Ovu-Mir-2-o47d Ovu-Mir-2-o48-v1 Ovu-Mir-2-o48-v2 Ovu-Mir-2-o49 Ovu-Mir-2-P12 Pau-Mir-2-P12 Pau-Mir-2-o109 Pau-Mir-2-o110 Pau-Mir-2-o111 Pau-Mir-2-o112 Pau-Mir-2-o113 Pca-Mir-2-o139 Pca-Mir-2-o140 Pca-Mir-2-o141 Pca-Mir-2-o142 Pca-Mir-2-o143 Pca-Mir-2-o144 Pca-Mir-2-o145 Pca-Mir-2-o146 Pca-Mir-2-o147 Pca-Mir-2-o148 Pca-Mir-2-o149 Pca-Mir-2-o150 Pca-Mir-2-o151 Pca-Mir-2-o152 Pcr-Mir-2-o159 Pcr-Mir-2-o160 Pdu-Mir-2-o25-v1 Pdu-Mir-2-o25-v2 Pdu-Mir-2-o26 Pdu-Mir-2-o27 Pdu-Mir-2-o28 Pdu-Mir-2-o29 Pdu-Mir-2-o30 Pdu-Mir-2-o31 Pdu-Mir-2-o32 Pdu-Mir-2-o33 Pdu-Mir-2-o34 Pdu-Mir-2-o35 Pdu-Mir-2-P12 Pve-Mir-2-o74-v1 Pve-Mir-2-o74-v2 Pve-Mir-2-o75-v1 Pve-Mir-2-o75-v2 Pve-Mir-2-P12 Pve-Mir-2-o76-v1 Pve-Mir-2-o76-v2 Pve-Mir-2-o77 Pve-Mir-2-o78-v1 Pve-Mir-2-o78-v2 Pve-Mir-2-o79 Rph-Mir-2-o63 Rph-Mir-2-o64 Rph-Mir-2-o65 Rph-Mir-2-o66 Rph-Mir-2-o67 Rph-Mir-2-o68 Rph-Mir-2-o69 Rph-Mir-2-o70 Rph-Mir-2-o71 Rph-Mir-2-o72 Rph-Mir-2-o73 Rph-Mir-2-P12 Sma-Mir-2-o130 Sma-Mir-2-o131 Sma-Mir-2-o132 Sma-Mir-2-o133 Sma-Mir-2-o134 Sma-Mir-2-o135 Sme-Mir-2-o122a Sme-Mir-2-o122b Sme-Mir-2-o123 Sme-Mir-2-o124 Sme-Mir-2-o125 Sme-Mir-2-o126 Sme-Mir-2-o127 Sme-Mir-2-o128 Sme-Mir-2-o129 Snu-Mir-2-o40-v1 Snu-Mir-2-o40-v2 Snu-Mir-2-o41 Snu-Mir-2-o42-v1 Snu-Mir-2-o42-v2 Snu-Mir-2-o43 Snu-Mir-2-o44 Tca-Mir-2-P1-v1 Tca-Mir-2-P1-v2 Tca-Mir-2-P2a Tca-Mir-2-P2b Tca-Mir-2-P3-v1 Tca-Mir-2-P3-v2 Tca-Mir-2-P4-v1 Tca-Mir-2-P4-v2 Tca-Mir-2-P5c Tca-Mir-2-P5d Tca-Mir-2-P5e Tca-Mir-2-P7 Tca-Mir-2-P8 Tur-Mir-2-o142a Tur-Mir-2-o142b Tur-Mir-2-o143 War-Mir-2-P12 War-Mir-2-o93 War-Mir-2-o94 War-Mir-2-o95 War-Mir-2-o96 War-Mir-2-o97 War-Mir-2-o98 War-Mir-2-o99

Node of Origin (locus)

Protostomia

Node of Origin (family)

Protostomia

Genome context
(GCA_012934845.2_ASM1293484v2_PLE_genomic)

WNNJ02000478.1: 61390-61446 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

GACUAGCAAACGUCUUAGUUAAAAUGCUAUCCUACAAGUUAUUUGUGUUUAUGUAGUCAGUAACAUAUCACAGUUAGCUUGUAGAAUUGUAUUUAACUUGUGCCUAAAUGCUUCGUC

Get precursor sequence

Structure

        10           20        30        40        50        
GACUAGCAAACGUCUUA---|     A   U  C          U     UU    UAGU 
                    GUUAAA UGC AU CUACAAGUUA UUGUG  UAUG    C
                    CAAUUU AUG UA GAUGUUCGAU GACAC  AUAC    A
CUGCUUCGUAAAUCCGUGUU^     -   U  A          U     U-    AAUG 
     110       100         90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

No

Motifs

No

Tissue expression

-

+

To	To	To

Star sequence

Ple-Mir-2_5p*

mirBase accession

None

Sequence

0- CCUACAAGUUAUUUGUGUUUAUG -23

Get sequence

Mature sequence

Ple-Mir-2_3p

mirBase accession

None

Sequence

35- UAUCACAGUUAGCUUGUAGAAU -57

Get sequence