MirGeneDB ID | Asu-Mir-2-o7b |
Family name |
MIR-2 (all species) |
Seed |
AUCACAG |
Species |
Large roundworm (Ascaris suum) |
MiRBase ID |
|
Paralogues |
Asu-Mir-2-o6
Asu-Mir-2-o7a
Asu-Mir-2-o8
Asu-Mir-2-o9
Asu-Mir-2-o10
Asu-Mir-2-o11a
Asu-Mir-2-o11b
Asu-Mir-2-o11c
Asu-Mir-2-o11d
Asu-Mir-2-P11
|
Orthologues |
Aae-Mir-2-P7
Bge-Mir-2-P7
Dan-Mir-2-P7
Dme-Mir-2-P7
Dmo-Mir-2-P7
Dsi-Mir-2-P7
Dya-Mir-2-P7
Hme-Mir-2-P7
Tca-Mir-2-P7
|
Node of Origin (locus) |
A. suum
|
Node of Origin (family) |
Protostomia
|
Genome context (ASU_PRJNA80881_plustraces) |
Scaffold2380: 4192-4249 [+]
|
Precursor (pre-Mir +30nt flank) |
GAUUUCGACGGGCACAAGGCCGUUCCAGCACGUCAAAGUGGUGGUGAUGUGUUGGGGAUAAGCUCAUAUCACAGCCAGCUUUGAUGUGCUGUGGCAGUCAGUCGCCCUCUCACUCGUU
Get precursor sequence
|
Structure | 10 20 30 40 50
GAUUUCGACGGGCACAA-- C UC -| G UUGGGG
GGC GU CAGCACGUCAAAG UGGU GUGAUGUG \
CUG CG GUCGUGUAGUUUC ACCG CACUAUAC A
UUGCUCACUCUCCCGCUGA A GU G^ A UCGAAU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
0h |
11 |
12 |
24 |
46 |
64 |
6d |
7d |
8d |
96 |
Em |
La |
Ov |
Se |
Sp |
Te |
Zy |
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Star sequence |
Asu-Mir-2-o7b_5p* (predicted) |
mirBase accession | None |
Sequence |
0- CGUCAAAGUGGUGGUGAUGUG -21
Get sequence
|
Mature sequence |
Asu-Mir-2-o7b_3p |
mirBase accession | None |
Sequence |
36- UAUCACAGCCAGCUUUGAUGUG -58
Get sequence
|