MirGeneDB 3.0
MirGeneDB ID

Asu-Mir-2-o11b

Family name MIR-2 (all species)
Seed AUCACAG
Species Large roundworm (Ascaris suum)
MiRBase ID asu-mir-43c-1
Paralogues Asu-Mir-2-o6  Asu-Mir-2-o7a  Asu-Mir-2-o7b  Asu-Mir-2-o8  Asu-Mir-2-o9  Asu-Mir-2-o10  Asu-Mir-2-o11a  Asu-Mir-2-o11c  Asu-Mir-2-o11d  Asu-Mir-2-P11 
Orthologues Cbr-Mir-2-P11  Cel-Mir-2-P11  Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) A.suum
Node of Origin (family) Protostomia
Genome context
(ASU_PRJNA80881_plustraces)		 Scaffold919: 52009-52066 [+]
Clustered miRNAs
(< 50kb from Mir-2-o11b)		 Mir-2-o11b Scaffold919: 52009-52066 [+]
Mir-279-o26 Scaffold919: 52254-52311 [+]
Precursor
(pre-Mir +30nt flank)
GUAUCGCGAAGCCCGGUGCGUACAGCAGCGCGUGGCAAGGAUACUGCGAUGCGUCAUGUUGCAUCGUAUCACAGUUCUUUGUCACCCUUUGCAUCACGCAUAUCCUGCGAUGCGUCGU
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Structure
        10          20        30        40        50         
GUAUCGCGAAGCCCGGU--|   ACA    CGC          U    C      UCAUG 
                   GCGU   GCAG   GUGGCAAGGA ACUG GAUGCG     \
                   CGCA   CGUU   CACUGUUUCU UGAC CUAUGC     U
UGCUGCGUAGCGUCCUAUA^   CUA    UCC          -    A      UACGU 
      110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Ce Em Em Em Em Em Em Em Em Em Em La Ov Se Sp Te Zy
Star sequence

Asu-Mir-2-o11b_5p* (predicted)
mirBase accessionMIMAT0021453
Sequence 
0- CGUGGCAAGGAUACUGCGAUGCG -23
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Mature sequence

Asu-Mir-2-o11b_3p
mirBase accessionMIMAT0021454
Sequence 
36- UAUCACAGUUCUUUGUCACCCU -58
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