Mir-2-o7a

MirGeneDB ID

Asu-Mir-2-o7a

Family name

MIR-2 (all species)

Seed

AUCACAG

Species

Large roundworm (Ascaris suum)

MiRBase ID

asu-mir-2a

Paralogues

Asu-Mir-2-o6 Asu-Mir-2-o7b Asu-Mir-2-o8 Asu-Mir-2-o9 Asu-Mir-2-o10 Asu-Mir-2-o11a Asu-Mir-2-o11b Asu-Mir-2-o11c Asu-Mir-2-o11d Asu-Mir-2-P11

Orthologues

Aae-Mir-2-P7 Aga-Mir-2-P7 Bge-Mir-2-P7 Dan-Mir-2-P7 Dlo-Mir-2-P7 Dme-Mir-2-P7 Dmo-Mir-2-P7 Dsi-Mir-2-P7 Dya-Mir-2-P7 Gpa-Mir-2-P7 Gsp-Mir-2 Hme-Mir-2-P7 Ple-Mir-2 Tca-Mir-2-P7

Node of Origin (locus)

A.suum

Node of Origin (family)

Protostomia

Genome context
(ASU_PRJNA80881_plustraces)

Scaffold65: 285241-285298 [+]

Clustered miRNAs
(< 50kb from Mir-2-o7a)

Mir-71 Scaffold65: 284611-284668 [+]
Mir-2-o7a Scaffold65: 285241-285298 [+]

Precursor
(pre-Mir +30nt flank)

GAUGUCGACGGGCACAAGGCCGUUCCAGCACGUCAAAGUGGUGGUGAUUUGUUGUGGAUAAGCUCAUAUCACAGCCAGCUUUGAUGUGCUGUGGCAGUCAAUCGUUGCCUCACUCGUC

Get precursor sequence

Structure

        10          20        30         40        50        
GAUGUCGACGGGCACAA--   C  UC             -|   G     U  UUGUGG 
                   GGC GU  CAGCACGUCAAAG UGGU GUGAU UG      \
                   CUG CG  GUCGUGUAGUUUC ACCG CACUA AC      A
CUGCUCACUCCGUUGCUAA   A  GU             G^   A     U  UCGAAU 
      110       100        90        80        70        60