Mir-2-P7

MirGeneDB ID

Tca-Mir-2-P7

Family name

MIR-2 (all species)

Seed

AUCACAG

Species

Red flour beetle (Tribolium castaneum)

MiRBase ID

tca-mir-11

Paralogues

Tca-Mir-2-P1-v1 Tca-Mir-2-P1-v2 Tca-Mir-2-P2a Tca-Mir-2-P2b Tca-Mir-2-P3-v1 Tca-Mir-2-P3-v2 Tca-Mir-2-P4-v1 Tca-Mir-2-P4-v2 Tca-Mir-2-P5c Tca-Mir-2-P5d Tca-Mir-2-P5e Tca-Mir-2-P8

Orthologues

Aae-Mir-2-P7 Aga-Mir-2-P7 Asu-Mir-2-o7a Asu-Mir-2-o7b Bge-Mir-2-P7 Dan-Mir-2-P7 Dlo-Mir-2-P7 Dme-Mir-2-P7 Dmo-Mir-2-P7 Dsi-Mir-2-P7 Dya-Mir-2-P7 Gpa-Mir-2-P7 Gsp-Mir-2 Hme-Mir-2-P7 Ple-Mir-2

Node of Origin (locus)

Neoptera

Node of Origin (family)

Protostomia

Genome context
(Tcas5.2)

LG5: 7197519-7197576 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P7)

Mir-2-P7 LG5: 7197519-7197576 [+] Ensembl
Mir-29-P2h LG5: 7197706-7197758 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

CUAACAAACGCUUACAUUGUAAAUGCAUUCUGGGAUUCUGACUGUGACCUGUGUGUGUCUGAUUCACAUCACAGGCAGAGUUCUAGCUAUGCGUUUACAGCUUGCUUCUCAACUCCCA

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Structure

        10          20         30        40        50         
CUAACAAACGCUUACAU--           U-|          A      CC    UGUGU 
                   UGUAAAUGCAU  CUGGGAUUCUG CUGUGA  UGUG     \
                   ACAUUUGCGUA  GAUCUUGAGAC GACACU  ACAC     C
ACCCUCAACUCUUCGUUCG           UC^          G      --    UUAGU 
      110       100        90        80        70          60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Ad	Ea	Em	Em	Em	Em	Em	Fe	Fe	Fe	Fe	Oo

Star sequence

Tca-Mir-2-P7_5p*

mirBase accession

MIMAT0018854

Sequence

0- UGGGAUUCUGACUGUGACCUGUG -23

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Mature sequence

Tca-Mir-2-P7_3p

mirBase accession

MIMAT0018855

Sequence

36- CAUCACAGGCAGAGUUCUAGCU -58

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