Mir-2-P5d

MirGeneDB ID

Tca-Mir-2-P5d

Family name

MIR-2 (all species)

Seed

AAGGAAC

Species

Red flour beetle (Tribolium castaneum)

MiRBase ID

tca-mir-2944b

Paralogues

Tca-Mir-2-P1-v1 Tca-Mir-2-P1-v2 Tca-Mir-2-P2a Tca-Mir-2-P2b Tca-Mir-2-P3-v1 Tca-Mir-2-P3-v2 Tca-Mir-2-P4-v1 Tca-Mir-2-P4-v2 Tca-Mir-2-P5c Tca-Mir-2-P5e Tca-Mir-2-P7 Tca-Mir-2-P8

Orthologues

Cel-Mir-2-o5 Dan-Mir-2-P5 Dlo-Mir-2-P5 Dma-Mir-2-P5 Dme-Mir-2-P5 Dmo-Mir-2-P5 Dpu-Mir-2-P5 Dsi-Mir-2-P5 Dya-Mir-2-P5 Gpa-Mir-2-P5-v1 Gpa-Mir-2-P5-v2 Gsp-Mir-2 Ple-Mir-2

Node of Origin (locus)

T. castaneum

Node of Origin (family)

Protostomia

Genome context
(Tcas5.2)

LG5: 7455840-7455901 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P5d)

Mir-9-P9b-v1 LG5: 7455728-7455787 [+] Ensembl
Mir-9-P9b-v2 LG5: 7455728-7455788 [+] Ensembl
Mir-2-P5d LG5: 7455840-7455901 [+] Ensembl
Mir-3-P4 LG5: 7455958-7456014 [+] Ensembl
Mir-3893 LG5: 7457235-7457292 [+] Ensembl
Mir-3-P6 LG5: 7457335-7457391 [+] Ensembl
Mir-3-P5 LG5: 7457453-7457508 [+] Ensembl
Mir-36 LG5: 7457551-7457607 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

UUCUGAAGACUUCAUUUCGCAUAAUGCAUUUAAGGAACUACAGGUGUGAUGUGUGAUUUCAUUAAACGUAUCACAGCCGUAGUUGCCUUACUGUAUUUGUGAAAUCUCAACAAAAUUCGAAC

Get precursor sequence

Structure

        10            20        30         40         50          
UUCUGAAGACUUCAUUU----|   U      UU     -      A  -         UGAUUU 
                     CGCA AAUGCA  UAAGG AACUAC GG UGUGAUGUG      \
                     GUGU UUAUGU  AUUCC UUGAUG CC ACACUAUGC      C
CAAGCUUAAAACAACUCUAAA^   -      C-     G      -  G         AAAUUA 
120       110       100          90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ea	Em	Em	Em	Em	Em	Fe	Fe	Fe	Fe	Oo

Mature sequence

Tca-Mir-2-P5d_5p

mirBase accession

MIMAT0018746

Sequence

0- UAAGGAACUACAGGUGUGAUGUG -23

Get sequence

Co-mature sequence

Tca-Mir-2-P5d_3p

mirBase accession

MIMAT0018747

Sequence

38- UAUCACAGCCGUAGUUGCCUUACU -62

Get sequence