Mir-3-P5

MirGeneDB ID

Tca-Mir-3-P5

Family name

MIR-3 (all species)

Seed

CACUGGG

Species

Red flour beetle (Tribolium castaneum)

MiRBase ID

tca-mir-309b

Paralogues

Tca-Mir-3-P4 Tca-Mir-3-P6 Tca-Mir-3-P7-v1 Tca-Mir-3-P7-v2 Tca-Mir-3-P8 Tca-Mir-3-P9a Tca-Mir-3-P9b Tca-Mir-3-P10 Tca-Mir-3-P11 Tca-Mir-3-P12a Tca-Mir-3-P12b Tca-Mir-3-P13a Tca-Mir-3-P13b

Orthologues

Dlo-Mir-3 Dma-Mir-3 Dpu-Mir-3 Gpa-Mir-3

Node of Origin (locus)

T. castaneum

Node of Origin (family)

Pancrustacea

Genome context
(Tcas5.2)

LG5: 7457453-7457508 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-3-P5)

Mir-9-P9b-v1 LG5: 7455728-7455787 [+] Ensembl
Mir-9-P9b-v2 LG5: 7455728-7455788 [+] Ensembl
Mir-2-P5d LG5: 7455840-7455901 [+] Ensembl
Mir-3-P4 LG5: 7455958-7456014 [+] Ensembl
Mir-3893 LG5: 7457235-7457292 [+] Ensembl
Mir-3-P6 LG5: 7457335-7457391 [+] Ensembl
Mir-3-P5 LG5: 7457453-7457508 [+] Ensembl
Mir-36 LG5: 7457551-7457607 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

AUAUUAUCAAACCAUUUGCCCAUCACAUCUCGACUAACUCGAUUCAGUUGAUGUUAAUUAGAUAUCACUGGGUUGAGUUUGUCUCGAUGUUUUGUGCCCAUCAUCAAGGAUCAAUC

Get precursor sequence

Structure

        10          20        30        40        50        
AUAUUAUCAAACCAUUU--| C  UC     UC   U             U    UUAA 
                   GC CA  ACAUC  GAC AACUCGAUUCAGU GAUG    \
                   CG GU  UGUAG  CUG UUGAGUUGGGUCA CUAU    U
CUAACUAGGAACUACUACC^ U  UU     CU   U             -    AGAU 
    110       100        90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ad	Ea	Em	Em	Em	Em	Em	Fe	Fe	Fe	Fe	Oo

Star sequence

Tca-Mir-3-P5_5p*

mirBase accession

MIMAT0018886

Sequence

0- CGACUAACUCGAUUCAGUUGAUG -23

Get sequence

Mature sequence

Tca-Mir-3-P5_3p

mirBase accession

MIMAT0018887

Sequence

34- UCACUGGGUUGAGUUUGUCUCG -56

Get sequence