MirGeneDB 3.0
MirGeneDB ID

Tca-Mir-9-P9b-v1

Family name MIR-9 (all species)
Seed UAAAGCU
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-9d
Paralogues Tca-Mir-9-P9a  Tca-Mir-9-P9b-v2  Tca-Mir-9-P9c-v1  Tca-Mir-9-P9c-v2  Tca-Mir-9-P10  Tca-Mir-9-P12 
Orthologues Agr-Mir-9  Bfl-Mir-9  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cte-Mir-9  Dan-Mir-9-P9  Dgr-Mir-9  Dlo-Mir-9-P9  Dma-Mir-9-P9  Dme-Mir-9-P9  Dmo-Mir-9-P9  Dpu-Mir-9-P9  Dsi-Mir-9-P9  Dya-Mir-9-P9  Eba-Mir-9  Egr-Mir-9  Esc-Mir-9  Gsa-Mir-9  Gsp-Mir-9  Hme-Mir-9-P9  Hmi-Mir-9  Hru-Mir-9  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Llo-Mir-9  Mom-Mir-9  Npo-Mir-9  Obi-Mir-9  Ofu-Mir-9  Ovu-Mir-9  Pau-Mir-9  Pdu-Mir-9  Pmi-Mir-9  Pve-Mir-9  Rph-Mir-9  Sma-Mir-9  Snu-Mir-9  Spu-Mir-9  War-Mir-9  Xbo-Mir-9 
Node of Origin (locus) T. castaneum
Node of Origin (family) Bilateria
Genome context
(Tcas5.2)		 LG5: 7455728-7455787 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-9-P9b-v1)		 Mir-9-P9b-v1 LG5: 7455728-7455787 [+] Ensembl
Mir-9-P9b-v2 LG5: 7455728-7455788 [+] Ensembl
Mir-2-P5d LG5: 7455840-7455901 [+] Ensembl
Mir-3-P4 LG5: 7455958-7456014 [+] Ensembl
Mir-3893 LG5: 7457235-7457292 [+] Ensembl
Mir-3-P6 LG5: 7457335-7457391 [+] Ensembl
Mir-3-P5 LG5: 7457453-7457508 [+] Ensembl
Mir-36 LG5: 7457551-7457607 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GCACCCGUAGAAAUACGUCUACUUUAUAUUUCUUUGGUGAUCUAACUUAUGAUUAACUUUAUAAGUCAUAAAGCUAGAUUCACCAAAGAAAUAUGUGGUUGGCAACGCUACGUUCUGAAG
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Structure
        10         20        30         40         50         
GCACCCGUAGAAAUACG-  U   U               -     A -|     UUAACU 
                  UC ACU UAUAUUUCUUUGGUG AUCUA C UUAUGA      \
                  GG UGG GUAUAAAGAAACCAC UAGAU G AAUACU      U
GAAGUCUUGCAUCGCAAC  U   U               U     C A^     GAAUAU 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Star sequence

Tca-Mir-9-P9b-v1_5p*
mirBase accessionMIMAT0018748
Sequence 
0- UCUUUGGUGAUCUAACUUAUGA -22
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Mature sequence

Tca-Mir-9-P9b-v1_3p
mirBase accessionMIMAT0018749
Sequence 
37- AUAAAGCUAGAUUCACCAAAGAA -60
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