MirGeneDB 3.0
MirGeneDB ID

Dme-Mir-9-P9

Family name MIR-9 (all species)
Seed UAAAGCU
Species Fruit fly (Drosophila melanogaster)
MiRBase ID dme-mir-4
Paralogues Dme-Mir-9-P10  Dme-Mir-9-P11  Dme-Mir-9-P12-v1  Dme-Mir-9-P12-v2  Dme-Mir-9-P13 
Orthologues Agr-Mir-9  Bfl-Mir-9  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cte-Mir-9  Dan-Mir-9-P9  Dgr-Mir-9  Dlo-Mir-9-P9  Dma-Mir-9-P9  Dmo-Mir-9-P9  Dpu-Mir-9-P9  Dsi-Mir-9-P9  Dya-Mir-9-P9  Eba-Mir-9  Egr-Mir-9  Esc-Mir-9  Gsa-Mir-9  Gsp-Mir-9  Hme-Mir-9-P9  Hmi-Mir-9  Hru-Mir-9  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Llo-Mir-9  Mom-Mir-9  Npo-Mir-9  Obi-Mir-9  Ofu-Mir-9  Ovu-Mir-9  Pau-Mir-9  Pdu-Mir-9  Pmi-Mir-9  Pve-Mir-9  Rph-Mir-9  Sma-Mir-9  Snu-Mir-9  Spu-Mir-9  Tca-Mir-9-P9a  Tca-Mir-9-P9b-v1  Tca-Mir-9-P9b-v2  Tca-Mir-9-P9c-v1  Tca-Mir-9-P9c-v2  War-Mir-9  Xbo-Mir-9 
Node of Origin (locus) Pancrustacea
Node of Origin (family) Bilateria
Genome context
(Drosophila_melanogaster_BDGP6)		 2R: 19661300-19661356 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-9-P9)		 Mir-4983 2R: 19637431-19637502 [+] UCSC Ensembl
Mir-2-P6c 2R: 19660722-19660787 [-] UCSC Ensembl
Mir-2-P6b 2R: 19660874-19660935 [-] UCSC Ensembl
Mir-2-P6a 2R: 19661012-19661074 [-] UCSC Ensembl
Mir-2-P5 2R: 19661162-19661222 [-] UCSC Ensembl
Mir-9-P9 2R: 19661300-19661356 [-] UCSC Ensembl
Mir-279-P1 2R: 19661435-19661509 [-] UCSC Ensembl
Mir-3-P2 2R: 19661600-19661656 [-] UCSC Ensembl
Mir-3-P1 2R: 19661710-19661768 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAAAUAUUAUGGAGCGGUUGCAAUUAGUUUCUUUGGUCGUCCAGCCUUAGGUGAUUUUUCCGGUCAUAAAGCUAGACAACCAUUGAAGUUCGUUGUGGCAUUAGCAGCACCACGAGU
Get precursor sequence
Structure
        10          20        30        40        50         
AAAAUAUUAUGGAGCGG--|UG    U GU   UU    C   C   CUUAG    UUUU 
                   U  CAAU A  UUC  UGGU GUC AGC     GUGA    \
                   G  GUUG U  AAG  ACCA CAG UCG     UACU    U
UGAGCACCACGACGAUUAC^GU    C UG   UU    A   A   AAA--    GGCC 
     110       100        90        80        70          60
Deep sequencing
Go to detailed chart
CommentThere is a second Drosha cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Bo He He La Ov Sa Wh
Star sequence

Dme-Mir-9-P9_5p*
mirBase accessionMIMAT0020785
Sequence 
0- CUUUGGUCGUCCAGCCUUAGGUGA -24
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Mature sequence

Dme-Mir-9-P9_3p
mirBase accessionMIMAT0000109
Sequence 
35- AUAAAGCUAGACAACCAUUGAA -57
Get sequence
Proposed targets microrna.org: MIMAT0000109
TargetScanFly: dme-miR-4