Mir-9-P13

MirGeneDB ID

Dme-Mir-9-P13

Family name

MIR-9 (all species)

Seed

CUUUGGU

Species

Fruit fly (Drosophila melanogaster)

MiRBase ID

dme-mir-9b

Paralogues

Dme-Mir-9-P9 Dme-Mir-9-P10 Dme-Mir-9-P11 Dme-Mir-9-P12-v1 Dme-Mir-9-P12-v2

Orthologues

Aae-Mir-9-P13 Aga-Mir-9-P13 Agr-Mir-9 Bfl-Mir-9 Bge-Mir-9-P13 Bko-Mir-9 Bla-Mir-9 Bpl-Mir-9 Cin-Mir-9 Cte-Mir-9 Dan-Mir-9-P13 Dgr-Mir-9 Dlo-Mir-9-P13 Dmo-Mir-9-P13 Dsi-Mir-9-P13 Dya-Mir-9-P13 Eba-Mir-9 Egr-Mir-9 Esc-Mir-9 Gpa-Mir-9-P13 Gsa-Mir-9 Gsp-Mir-9 Hmi-Mir-9 Hru-Mir-9 Isc-Mir-9 Lan-Mir-9 Lgi-Mir-9 Llo-Mir-9 Mom-Mir-9 Npo-Mir-9 Obi-Mir-9 Ofu-Mir-9 Ovu-Mir-9 Pau-Mir-9 Pdu-Mir-9 Pmi-Mir-9 Pve-Mir-9 Rph-Mir-9 Sma-Mir-9 Snu-Mir-9 Spu-Mir-9 War-Mir-9 Xbo-Mir-9

Node of Origin (locus)

Neoptera

Node of Origin (family)

Bilateria

Genome context
(Drosophila_melanogaster_BDGP6)

2L: 16698758-16698820 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-9-P13)

Mir-9-P11 2L: 16697936-16698005 [+] UCSC Ensembl
Mir-306 2L: 16698418-16698476 [+] UCSC Ensembl
Mir-9-P12-v1 2L: 16698572-16698634 [+] UCSC Ensembl
Mir-9-P12-v2 2L: 16698572-16698634 [+] UCSC Ensembl
Mir-9-P13 2L: 16698758-16698820 [+] UCSC Ensembl
Mir-1006 2L: 16724795-16724858 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AUGUUGCUCUUUUGUUUGCAUAUUAUUUGCUCUUUGGUGAUUUUAGCUGUAUGGUGUUUAUGUAUAUUCCAUAGAGCUUUAUUACCAAAAACCAAAUGGUUUCUGCAUUAUGUUUGAGUUGAU

Get precursor sequence

Structure

        10        20          30        40        50        60 
AUGUUGCUCUUUUGUUUGCAU--|       CUC         UUU    G    GUGUUUA 
                       AUUAUUUG   UUUGGUGAU   AGCU UAUG       U
                       UGGUAAAC   AAACCAUUA   UCGA AUAC       G
UAGUUGAGUUUGUAUUACGUCUU^       CAA         UU-    G    CUUAUAU 
 120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), UGUG in loop

Tissue expression

Bo	He	He	La	Ov	Sa	Wh

Mature sequence

Dme-Mir-9-P13_5p

mirBase accession

MIMAT0000395

Sequence

0- UCUUUGGUGAUUUUAGCUGUAUG -23

Get sequence

Proposed targets

microrna.org: MIMAT0000395
TargetScanFly: dme-miR-9b

Star sequence

Dme-Mir-9-P13_3p*

mirBase accession

MIMAT0020829

Sequence

41- UAGAGCUUUAUUACCAAAAACC -63

Get sequence