Mir-9-P13

MirGeneDB ID

Dmo-Mir-9-P13

Family name

MIR-9 (all species)

Seed

CUUUGGU

Species

Fruit fly (Drosophila mojavensis)

MiRBase ID

dmo-mir-9b

Paralogues

Dmo-Mir-9-P9 Dmo-Mir-9-P10 Dmo-Mir-9-P11 Dmo-Mir-9-P12-v1 Dmo-Mir-9-P12-v2

Orthologues

Aae-Mir-9-P13 Aga-Mir-9-P13 Agr-Mir-9 Bfl-Mir-9 Bge-Mir-9-P13 Bko-Mir-9 Bla-Mir-9 Bpl-Mir-9 Cin-Mir-9 Cte-Mir-9 Dan-Mir-9-P13 Dgr-Mir-9 Dlo-Mir-9-P13 Dme-Mir-9-P13 Dsi-Mir-9-P13 Dya-Mir-9-P13 Eba-Mir-9 Egr-Mir-9 Esc-Mir-9 Gpa-Mir-9-P13 Gsa-Mir-9 Gsp-Mir-9 Hmi-Mir-9 Hru-Mir-9 Isc-Mir-9 Lan-Mir-9 Lgi-Mir-9 Llo-Mir-9 Mom-Mir-9 Npo-Mir-9 Obi-Mir-9 Ofu-Mir-9 Ovu-Mir-9 Pau-Mir-9 Pdu-Mir-9 Pmi-Mir-9 Pve-Mir-9 Rph-Mir-9 Sma-Mir-9 Snu-Mir-9 Spu-Mir-9 War-Mir-9 Xbo-Mir-9

Node of Origin (locus)

Neoptera

Node of Origin (family)

Bilateria

Genome context
(Dmoj_caf1)

scaffold_6500: 7202321-7202381 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-9-P13)

Mir-9-P11 scaffold_6500: 7201357-7201423 [+] Ensembl
Mir-306 scaffold_6500: 7201959-7202025 [+] Ensembl
Mir-9-P12-v1 scaffold_6500: 7202147-7202208 [+] Ensembl
Mir-9-P12-v2 scaffold_6500: 7202147-7202208 [+] Ensembl
Mir-9-P13 scaffold_6500: 7202321-7202381 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

GUUUGGCUUUUUAUUUUGCAUAUUAUUUGUUCUUUGGUGAUUUUAGCUGUAUGGUGUGCGCGUAUUCCAUAGAGCUUUAUUACCAAAAACCAAAUGGUCUUUGCAUUGCUUUCUUUUCGUU

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Structure

        10        20          30        40        50        60
GUUUGGCUUUUUAUUUUGCAU--|       UUC         UUU    G    GUGUGC 
                       AUUAUUUG   UUUGGUGAU   AGCU UAUG      G
                       UGGUAAAC   AAACCAUUA   UCGA AUAC      C
UUGCUUUUCUUUCGUUACGUUUC^       CAA         UU-    G    CUUAUG 
 .       110       100        90        80         70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), UGUG in loop

Tissue expression

Em	Fe	Ma	Ma

Mature sequence

Dmo-Mir-9-P13_5p

mirBase accession

MIMAT0008666

Sequence

0- UCUUUGGUGAUUUUAGCUGUAUG -23

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Star sequence

Dmo-Mir-9-P13_3p*

mirBase accession

None

Sequence

39- UAGAGCUUUAUUACCAAAAACC -61

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