MirGeneDB 3.0
MirGeneDB ID

Dmo-Mir-9-P11

Family name MIR-9 (all species)
Seed CUUUGGU
Species Fruit fly (Drosophila mojavensis)
MiRBase ID dmo-mir-9c
Paralogues Dmo-Mir-9-P9  Dmo-Mir-9-P10  Dmo-Mir-9-P12-v1  Dmo-Mir-9-P12-v2  Dmo-Mir-9-P13 
Orthologues Aae-Mir-9-P11  Aga-Mir-9-P11  Agr-Mir-9  Bfl-Mir-9  Bge-Mir-9-P11  Bko-Mir-9  Bla-Mir-9  Bpl-Mir-9  Cin-Mir-9  Cte-Mir-9  Dan-Mir-9-P11  Dgr-Mir-9  Dme-Mir-9-P11  Dsi-Mir-9-P11  Dya-Mir-9-P11  Eba-Mir-9  Egr-Mir-9  Esc-Mir-9  Gpa-Mir-9-P11  Gsa-Mir-9  Gsp-Mir-9  Hme-Mir-9-P11  Hmi-Mir-9  Hru-Mir-9  Isc-Mir-9  Lan-Mir-9  Lgi-Mir-9  Llo-Mir-9  Mom-Mir-9  Npo-Mir-9  Obi-Mir-9  Ofu-Mir-9  Ovu-Mir-9  Pau-Mir-9  Pdu-Mir-9  Pmi-Mir-9  Pve-Mir-9  Rph-Mir-9  Sma-Mir-9  Snu-Mir-9  Spu-Mir-9  War-Mir-9  Xbo-Mir-9 
Node of Origin (locus) Neoptera
Node of Origin (family) Bilateria
Genome context
(Dmoj_caf1)		 scaffold_6500: 7201357-7201423 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-9-P11)		 Mir-9-P11 scaffold_6500: 7201357-7201423 [+] Ensembl
Mir-306 scaffold_6500: 7201959-7202025 [+] Ensembl
Mir-9-P12-v1 scaffold_6500: 7202147-7202208 [+] Ensembl
Mir-9-P12-v2 scaffold_6500: 7202147-7202208 [+] Ensembl
Mir-9-P13 scaffold_6500: 7202321-7202381 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CACAAUUGCCACUCUUUCAUUUUUGCUGUUUCUUUGGUAUUCUAGCUGUAGAUUGUUUUCACAUAUUGUAUCAUCUAAAGCUUUUAUACCAAAGCUCCAGCUUAAAUUGCUUGACACCGCCCAACCG
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Structure
        10          20        30        40        50        60   
CACAAUUGCCACUCUUUC--|   UU    UUU         UCU    G    UUGUUUUCAC 
                    AUUU  GCUG   CUUUGGUAU   AGCU UAGA          \
                    UAAA  CGAC   GAAACCAUA   UCGA AUCU          A
GCCAACCCGCCACAGUUCGU^   UU    CUC         UUU    A    ACUAUGUUAU 
     120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Em Fe Ma Ma
Mature sequence

Dmo-Mir-9-P11_5p
mirBase accessionMIMAT0008683
Sequence 
0- UCUUUGGUAUUCUAGCUGUAGA -22
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Star sequence

Dmo-Mir-9-P11_3p*
mirBase accessionNone
Sequence 
45- UAAAGCUUUUAUACCAAAGCUC -67
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