Mir-9-P12-v1

MirGeneDB ID

Dmo-Mir-9-P12-v1

Family name

MIR-9 (all species)

Seed

AAAGCUA

Species

Fruit fly (Drosophila mojavensis)

MiRBase ID

dmo-mir-79

Paralogues

Dmo-Mir-9-P9 Dmo-Mir-9-P10 Dmo-Mir-9-P11 Dmo-Mir-9-P12-v2 Dmo-Mir-9-P13

Orthologues

Aae-Mir-9-P12-v1 Aae-Mir-9-P12-v2 Aga-Mir-9-P12 Agr-Mir-9 Bfl-Mir-9 Bge-Mir-9-P12-v1 Bge-Mir-9-P12-v2 Bko-Mir-9 Bla-Mir-9 Bpl-Mir-9 Cin-Mir-9 Cte-Mir-9 Dan-Mir-9-P12-v1 Dan-Mir-9-P12-v2 Dgr-Mir-9 Dlo-Mir-9-P12-v1 Dlo-Mir-9-P12-v2 Dme-Mir-9-P12-v1 Dme-Mir-9-P12-v2 Dsi-Mir-9-P12-v1 Dsi-Mir-9-P12-v2 Dya-Mir-9-P12-v1 Dya-Mir-9-P12-v2 Eba-Mir-9 Egr-Mir-9 Esc-Mir-9 Gpa-Mir-9-P12-v1 Gpa-Mir-9-P12-v2 Gsa-Mir-9 Gsp-Mir-9 Hme-Mir-9-P12 Hmi-Mir-9 Hru-Mir-9 Isc-Mir-9 Lan-Mir-9 Lgi-Mir-9 Llo-Mir-9 Mom-Mir-9 Npo-Mir-9 Obi-Mir-9 Ofu-Mir-9 Ovu-Mir-9 Pau-Mir-9 Pdu-Mir-9 Pmi-Mir-9 Pve-Mir-9 Rph-Mir-9 Sma-Mir-9 Snu-Mir-9 Spu-Mir-9 Tca-Mir-9-P12 War-Mir-9 Xbo-Mir-9

Node of Origin (locus)

Neoptera

Node of Origin (family)

Bilateria

Genome context
(Dmoj_caf1)

scaffold_6500: 7202147-7202208 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-9-P12-v1)

Mir-9-P11 scaffold_6500: 7201357-7201423 [+] Ensembl
Mir-306 scaffold_6500: 7201959-7202025 [+] Ensembl
Mir-9-P12-v1 scaffold_6500: 7202147-7202208 [+] Ensembl
Mir-9-P12-v2 scaffold_6500: 7202147-7202208 [+] Ensembl
Mir-9-P13 scaffold_6500: 7202321-7202381 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

GUGUUUUUAAAUAUUCGCCCCAUUGCCGUUGCUUUGGCGCUUUAGCUGUAUGAUAGAUUUAAAUACUUCAUAAAGCUAGAUUACCAAAGCAUUGGCUCUGUGGCCAAACCCCAGCGAACUUG

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Structure

        10         20         30        40        50        60
GUGUUUUUAAAUAUUCGC-  -| UU    U        CGC       G    AUAGAUU 
                   CC CA  GCCG UGCUUUGG   UUUAGCU UAUG       U
                   GG GU  CGGU ACGAAACC   AGAUCGA AUAC       A
GUUCAAGCGACCCCAAACC  U^ CU    U        AUU       A    UUCAUAA 
120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Em	Fe	Ma	Ma

Star sequence

Dmo-Mir-9-P12-v1_5p*

mirBase accession

None

Sequence

0- GCUUUGGCGCUUUAGCUGUAUG -22

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Mature sequence

Dmo-Mir-9-P12-v1_3p

mirBase accession

MIMAT0008690

Sequence

40- UAAAGCUAGAUUACCAAAGCAU -62

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