Mir-9-P12-v2

MirGeneDB ID

Dan-Mir-9-P12-v2

Family name

MIR-9 (all species)

Seed

UAAAGCU

Species

Fruit fly (Drosophila ananassae)

MiRBase ID

dan-mir-79

Paralogues

Dan-Mir-9-P9 Dan-Mir-9-P10 Dan-Mir-9-P11 Dan-Mir-9-P12-v1 Dan-Mir-9-P13

Orthologues

Aae-Mir-9-P12-v1 Aae-Mir-9-P12-v2 Bfl-Mir-9 Bge-Mir-9-o12 Bla-Mir-9 Bpl-Mir-9 Cin-Mir-9 Cte-Mir-9 Dme-Mir-9-P12-v1 Dme-Mir-9-P12-v2 Dmo-Mir-9-P12-v1 Dmo-Mir-9-P12-v2 Dsi-Mir-9-P12-v1 Dsi-Mir-9-P12-v2 Dya-Mir-9-P12-v1 Dya-Mir-9-P12-v2 Esc-Mir-9 Isc-Mir-9 Lan-Mir-9 Lgi-Mir-9 Npo-Mir-9 Obi-Mir-9 Ovu-Mir-9 Pmi-Mir-9 Spu-Mir-9 Xbo-Mir-9

Node of Origin (locus)

Diptera

Node of Origin (family)

Bilateria

Genome context
(Dana_caf1)

scaffold_12916: 15864734-15864795 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-9-P12-v2)

Mir-9-P13 scaffold_12916: 15864555-15864614 [-] Ensembl
Mir-9-P12-v1 scaffold_12916: 15864734-15864795 [-] Ensembl
Mir-9-P12-v2 scaffold_12916: 15864734-15864795 [-] Ensembl
Mir-306 scaffold_12916: 15864875-15864933 [-] Ensembl
Mir-9-P11 scaffold_12916: 15865484-15865553 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

UAUAUAGUGUUCUAUAGCUGCUUAACCGAUGCUUUGGCGCUUUAGCUGUAUGAUAGAUUUAAAUACUUCAUAAAGCUAGAUUACCAAAGCAUUGGCUUCCGCAGGCCUGUCUUCAAGGAAUA

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Structure

        10         20         30        40        50        60
UAUAUAGUGUUCUAUAG-    UU  -|           CGC       G     UAGAUU 
                  CUGC  AA CCGAUGCUUUGG   UUUAGCU UAUGA      U
                  GACG  UU GGUUACGAAACC   AGAUCGA AUACU      A
AUAAGGAACUUCUGUCCG    CC  C^           AUU       A     UCAUAA 
120       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

Tissue expression

Da

Star sequence

Dan-Mir-9-P12-v2_5p*

mirBase accession

None

Sequence

0- GCUUUGGCGCUUUAGCUGUAUGA -23

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Mature sequence

Dan-Mir-9-P12-v2_3p

mirBase accession

MIMAT0008430

Sequence

39- AUAAAGCUAGAUUACCAAAGCAU -62

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