MirGeneDB ID | Dan-Mir-9-P10 |
Family name |
MIR-9 (all species) |
Seed |
CUUUGGU |
Species |
Fruit fly (Drosophila ananassae) |
MiRBase ID |
dan-mir-9a
|
Paralogues |
Dan-Mir-9-P9
Dan-Mir-9-P11
Dan-Mir-9-P12-v1
Dan-Mir-9-P12-v2
Dan-Mir-9-P13
|
Orthologues |
Aae-Mir-9-P10a
Aae-Mir-9-P10b
Aga-Mir-9-P10
Agr-Mir-9
Bfl-Mir-9
Bge-Mir-9-P10
Bko-Mir-9
Bla-Mir-9
Bpl-Mir-9
Cin-Mir-9
Cte-Mir-9
Dgr-Mir-9
Dlo-Mir-9-P10
Dma-Mir-9-P10
Dme-Mir-9-P10
Dmo-Mir-9-P10
Dpu-Mir-9-P10
Dsi-Mir-9-P10
Dya-Mir-9-P10
Eba-Mir-9
Egr-Mir-9
Esc-Mir-9
Gpa-Mir-9-P10
Gsa-Mir-9
Gsp-Mir-9
Hme-Mir-9-P10
Hmi-Mir-9
Hru-Mir-9
Isc-Mir-9
Lan-Mir-9
Lgi-Mir-9
Llo-Mir-9
Mom-Mir-9
Npo-Mir-9
Obi-Mir-9
Ofu-Mir-9
Ovu-Mir-9
Pau-Mir-9
Pdu-Mir-9
Pmi-Mir-9
Pve-Mir-9
Rph-Mir-9
Sma-Mir-9
Snu-Mir-9
Spu-Mir-9
Tca-Mir-9-P10
War-Mir-9
Xbo-Mir-9
|
Node of Origin (locus) |
Pancrustacea
|
Node of Origin (family) |
Bilateria
|
Genome context (Dana_caf1) |
scaffold_13337: 17332447-17332507 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AUCUUAUAUAACACUAUGGGUGCUAUGUUGUCUUUGGUUAUCUAGCUGUAUGAGUGAUAAAUAACGUCAUAAAGCUAGCUUACCGAAGUUAAUAUUAGCGUCUGUCCAGCGAAACAGUCCA
Get precursor sequence
|
Structure | 10 20 30 40 50
AUCUUAUAUAACACUAU- GU -| U UAU G GUGAUA
GG GCU AUGUUG CUUUGGU CUAGCU UAUGA \
UC CGA UAUAAU GAAGCCA GAUCGA AUACU A
ACCUGACAAAGCGACCUG UG U^ U UUC A GCAAUA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut -1 on both arms. |
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Dan-Mir-9-P10_5p |
mirBase accession | MIMAT0008458 |
Sequence |
0- UCUUUGGUUAUCUAGCUGUAUGA -23
Get sequence
|
Star sequence |
Dan-Mir-9-P10_3p* |
mirBase accession | None |
Sequence |
38- AUAAAGCUAGCUUACCGAAGUUA -61
Get sequence
|