Mir-9-P10

MirGeneDB ID

Dme-Mir-9-P10

Family name

MIR-9 (all species)

Seed

CUUUGGU

Species

Fruit fly (Drosophila melanogaster)

MiRBase ID

dme-mir-9a

Paralogues

Dme-Mir-9-P9 Dme-Mir-9-P11 Dme-Mir-9-P12-v1 Dme-Mir-9-P12-v2 Dme-Mir-9-P13

Orthologues

Aae-Mir-9-P10a Aae-Mir-9-P10b Aga-Mir-9-P10 Agr-Mir-9 Bfl-Mir-9 Bge-Mir-9-P10 Bko-Mir-9 Bla-Mir-9 Bpl-Mir-9 Cin-Mir-9 Cte-Mir-9 Dan-Mir-9-P10 Dgr-Mir-9 Dlo-Mir-9-P10 Dma-Mir-9-P10 Dmo-Mir-9-P10 Dpu-Mir-9-P10 Dsi-Mir-9-P10 Dya-Mir-9-P10 Eba-Mir-9 Egr-Mir-9 Esc-Mir-9 Gpa-Mir-9-P10 Gsa-Mir-9 Gsp-Mir-9 Hme-Mir-9-P10 Hmi-Mir-9 Hru-Mir-9 Isc-Mir-9 Lan-Mir-9 Lgi-Mir-9 Llo-Mir-9 Mom-Mir-9 Npo-Mir-9 Obi-Mir-9 Ofu-Mir-9 Ovu-Mir-9 Pau-Mir-9 Pdu-Mir-9 Pmi-Mir-9 Pve-Mir-9 Rph-Mir-9 Sma-Mir-9 Snu-Mir-9 Spu-Mir-9 Tca-Mir-9-P10 War-Mir-9 Xbo-Mir-9

Node of Origin (locus)

Pancrustacea

Node of Origin (family)

Bilateria

Genome context
(Drosophila_melanogaster_BDGP6)

3L: 19565140-19565200 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAUCGACUCUAUAUACAGGGUGCUAUGUUGUCUUUGGUUAUCUAGCUGUAUGAGUGAUAAAUAACGUCAUAAAGCUAGCUUACCGAAGUUAAUAUUAGCGUCUGCCCAGCGAGACAGCCAA

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Structure

        10         20         30        40        50          
AAUCGACUCUAUAUACA-  GU   -|     U       UAU      G     GUGAUA 
                  GG  GCU AUGUUG CUUUGGU   CUAGCU UAUGA      \
                  UC  CGA UAUAAU GAAGCCA   GAUCGA AUACU      A
AACCGACAGAGCGACCCG  UG   U^     U       UUC      A     GCAAUA 
 .       110       100        90        80        70

Deep sequencing

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Comment

There is a second Dicer cut -1 on both arms.

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Bo	He	He	La	Ov	Sa	Wh

Mature sequence

Dme-Mir-9-P10_5p

mirBase accession

MIMAT0000114

Sequence

0- UCUUUGGUUAUCUAGCUGUAUGA -23

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Proposed targets

microrna.org: MIMAT0000114
TargetScanFly: dme-miR-9a

Star sequence

Dme-Mir-9-P10_3p*

mirBase accession

MIMAT0020792

Sequence

38- AUAAAGCUAGCUUACCGAAGUUA -61

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